FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008128864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008128864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Total Bases3.1 kbp
Sequences flagged as poor quality0
Sequence length145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG1672.72727272727273No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA313.636363636363635No Hit
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGGGCTCCCAGCAGGG14.545454545454546No Hit
CTTCCAGGCCTCCTAGTGCTACCGTAGACAGCGATGAGAGTGACATTGCC14.545454545454546No Hit
CTTCCAGGCCCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGGA14.545454545454546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)