FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008128962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008128962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Total Bases1.8 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG215.384615384615385No Hit
CTTCCAGGCCTCCTTGACCTTGGGCTTCTCGTCCCCCCATGTACTCTGCG215.384615384615385No Hit
TGGGTCATGTGGTTCGGAGACGGCAAATTCTCAGTGGTGTGTGTTGAGAA215.384615384615385No Hit
CTTCCAGGCCTCCTAGTGCTCAGGGCCAAGCCGGACTTCAAGGAGCTCAC17.6923076923076925No Hit
CTTCAGGCCTCCTTGACCTTGGGCTTCTCGTTGATACCACTGCTTCCCAT17.6923076923076925No Hit
CTTCCAGGCTCCTTGACCTTGGGCTTCTCGTCCCCCCATGTACTCTGCGT17.6923076923076925No Hit
CATCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG17.6923076923076925No Hit
CTTCCAGGCCTCCTTGACCTTGGGCTTCTCGTTGATACCACTGCTTCCCA17.6923076923076925No Hit
CTTCCAGGCCTCCTTGACCTTGGGCTTCTCGTCCCCCATGTACTCTGCGT17.6923076923076925No Hit
CTTCCAGGCCTCCTAGGCTTACACTTGTTGCCAAGACCAAGTCTCTGCTA17.6923076923076925No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)