FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008129578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008129578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Total Bases3.7 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGTCATGTGGTTCGACAGCGATGAGAGTGACACTGTTCAGACCAAGTC726.923076923076923No Hit
CTTCCAGGCCTCCTAGTGCAACTGTATAGCTTCATGCCTGTGGTCCATGA27.6923076923076925No Hit
CTTCCAGGCCTCCTAGTGCTTACACTTGCTGTTCAGACCAAGTCTCTGCT27.6923076923076925No Hit
CTTCCAGGCCTCCTAGTGGACTGGCTGGAAATGCTGGACCCCGAGGTGGT27.6923076923076925No Hit
TGGGTCATGTGTGATAATGATAATGCTAATTGTGGAATGTAGGCAGTGTG13.8461538461538463No Hit
TGGGTCTGTGGTGGCGCCGGGCAGGAGACTGGGAACTTCTCTACCATGTG13.8461538461538463No Hit
TGGGTCATAGAATTAAGTATAAATAGTAAACTTATAAAGCTCCCAGAAGA13.8461538461538463No Hit
TGGGTCATGTGGTTCGGCAGCGATGAGAGTGACACTGTTCAGACCAAGTC13.8461538461538463No Hit
TGGGTCATGTGGTTCGGAGGCTTACACTTGCTGTTCAGACCAAGTCTCTG13.8461538461538463No Hit
TGGGTCATGTGGTTCGGGACAGCGATGAGAGTGACACTGTTCAGACCAAG13.8461538461538463No Hit
CTTCCAGGCCTCCTAGGCTTACACTTGCTGTTCAGACCAAGTCTCTGCTA13.8461538461538463No Hit
TGGGTCATTGGTTCGACAGCGATGAGAGTGACACTGTTCAGACCAAGTCT13.8461538461538463No Hit
CTTCCAGGCCTCCTACATTTCCCACAGAGACAGGACATGTTCCACCTCCA13.8461538461538463No Hit
TGGGTCATGTGGCTGTATAATACATATATGATAATGATGATAATCATAAC13.8461538461538463No Hit
TGGGTCATGTGATGAGAGTGACACTGTTCAGACCAAGTCTCTGCTACCGT13.8461538461538463No Hit
TGGGTCATGTGGTTCGGAGATCTCAGGACCCAAGGGAGAATGTTCCCCCT13.8461538461538463No Hit
TGGGTCATGTGGTTCGACAGCGATGAGAGTGACACTGTTCAGACGAAGTC13.8461538461538463No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)