FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008130242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008130242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2518
Total Bases365 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAG139055.20254169976172No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCTCACAGAGACCAA40616.12390786338364No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTTCACAGAGACCAAGTC1214.805401111993646No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATC1144.527402700555997No Hit
CATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCTCACAGAGACCAAG140.5559968228752978No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACGTTCACAGAGACCAAGTCT130.5162827640984908No Hit
AGATCATGTACTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG90.3574265289912629No Hit
AGATCATGTACGTGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG90.3574265289912629No Hit
AGATCATGTACGTCGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG80.3177124702144559No Hit
CCATTAGTGAGCTGGCAAACCCTGTGATGATTGATGCTCACAGAGACCAA80.3177124702144559No Hit
AGATCATGTACGCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG80.3177124702144559No Hit
AGATCATGTACGTCGGGGACGTCCGCGGCGTCACACAGAAGCATATCCAG70.2779984114376489No Hit
AGATCATGTACGTCGGGGACGTCCACAGCGTCACACAGAAGCATATCCAG70.2779984114376489No Hit
AGATCATGTACGTCGGGGATAAAGGCAACGTTCACAGAGACCAAGTCTCT70.2779984114376489No Hit
CCATTAGTGAGCTGGCAACCCTGTGATGATTGATGCTCACAGAGACCAAG70.2779984114376489No Hit
AGATCATGTACGTCGGGGCGTCCGCAGCGTCACACAGAAGCATATCCAGG70.2779984114376489No Hit
CCATTAGTGAGCTGGCCAAACGAGATTGTCCTAGGACACCAAACTCACTC60.23828435266084197No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGCCACACAGAAGCATATCCAG60.23828435266084197No Hit
AGATCAGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG60.23828435266084197No Hit
AGATCATGTACGTCGGGGACGTCCGCAGTGTCACACAGAAGCATATCCAG60.23828435266084197No Hit
AGATCATGTAGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG60.23828435266084197No Hit
AGATATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG50.19857029388403494No Hit
CCATTAGTGAGCTGGCCAACCCTTGATGATTGATGCTCACAGAGACCAAG50.19857029388403494No Hit
AGATCTGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG50.19857029388403494No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCGG50.19857029388403494No Hit
CCATTAGTGAGCTGGCCAACCTGTGATGATTGATGCTCACAGAGACCAAG50.19857029388403494No Hit
AGACATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG50.19857029388403494No Hit
AGATCATTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG50.19857029388403494No Hit
CCATTGTGAGCTGGCCAACCCTGTGATGATTGATGCTCACAGAGACCAAG40.15885623510722796No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCGCACAGAAGCATATCCAG40.15885623510722796No Hit
CCTTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG40.15885623510722796No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATGATGCTCACAGAGACCAAG40.15885623510722796No Hit
AGATCATGTACGTGGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAG40.15885623510722796No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATTCAG40.15885623510722796No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCGTATCCAG40.15885623510722796No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGGAGCATATCCAG40.15885623510722796No Hit
AGATCATGACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG40.15885623510722796No Hit
CCATTAGTGAGCTGGCCAACCCTGGATGATTGATGCTCACAGAGACCAAG40.15885623510722796No Hit
AGATCATGTACGTCGGGGACGTCCGCAACGTCACACAGAAGCATATCCAG40.15885623510722796No Hit
CCATTAGTGAGCTGGCCAACCCTGTGAAGATTGATGCTCACAGAGACCAA40.15885623510722796No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAACATATCCAG30.11914217633042098No Hit
CCATTAGTGAGCTGGCCAACCCTGTATGATTGATGCTCACAGAGACCAAG30.11914217633042098No Hit
CCATTAGTGAGCTGGCCAACCCCGAGAACCAGTTCAGAGTGGACTACATT30.11914217633042098No Hit
AGATCATGTACGTCGGAGGATAAAGGCAACGTTCACAGAGACCAAGTCTC30.11914217633042098No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATCTCACAGAGACCAAG30.11914217633042098No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACGGAAGCATATCCAG30.11914217633042098No Hit
CCATTAGTGGCTGGCCAACCCTGTGATGATTGATGCTCACAGAGACCAAG30.11914217633042098No Hit
AGATCATGTATGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAG30.11914217633042098No Hit
CCATTATGAGCTGGCCAACCCTGTGATGATTGATGCTCACAGAGACCAAG30.11914217633042098No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATAGATGCTCACAGAGACCAA30.11914217633042098No Hit
AGATCATGTACGTCGGGGGATAAAGGCAACGTTCACAGAGACCAAGTCTC30.11914217633042098No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)