FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008130417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008130417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3158
Total Bases451.2 kbp
Sequences flagged as poor quality0
Sequence length141-145
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT123739.170360987967065No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTT66220.96263457884737No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGCCATGTTGTAGAA2728.613046231792273No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATGATCTCCATGTTGTAGAACCA491.551614946168461No Hit
GCATCAATCATCAAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG200.6333122229259025No Hit
ACGTTGCCTTTATCCTCCCGACGTACATGATCTCCATGTTGTAGAACCAT120.37998733375554145No Hit
GCATCATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG110.3483217226092464No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGACGTCCCTCTT100.31665611146295125No Hit
GCATCAATCTTCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT100.31665611146295125No Hit
GCATCAATCATCCAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG90.2849905003166561No Hit
GCATCAATCATCAAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTTG90.2849905003166561No Hit
GCATCAATCATACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG90.2849905003166561No Hit
GATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG80.253324889170361No Hit
GCATAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG80.253324889170361No Hit
GCATCATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTTG80.253324889170361No Hit
GCATCAATCATCACAGGGTTGCCAGCTCACTAATGGCCATGTTGTAGAAC80.253324889170361No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT80.253324889170361No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCACTCTT70.22165927802406588No Hit
GCTCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG70.22165927802406588No Hit
GCATCAATCATCACAGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG60.18999366687777072No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGCCCCTCTT60.18999366687777072No Hit
ACGTTGCCTTTATCCTCCCACAGAGCCTTGGCATGCTCATAGAATTCGGG60.18999366687777072No Hit
GCATCAATCATCATGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG60.18999366687777072No Hit
GCATCAATCTTCACAGGGTTGGCCAGCTCACTAATGGCCATGTTGTAGAA50.15832805573147563No Hit
GCATCAATCATCCCAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT50.15832805573147563No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGCTGTCCCTCTT50.15832805573147563No Hit
GCATCAATCATCACGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG50.15832805573147563No Hit
GCATCAATCATACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTTG50.15832805573147563No Hit
GCCTCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT40.1266624445851805No Hit
GCATCAATCATCCAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTTG40.1266624445851805No Hit
GCATAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTTG40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGCCATGTTGTAGAAC40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAAGGCCATGTTGTAGAAC40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGCTGTCCCTCTT40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTA40.1266624445851805No Hit
GCATCAAACATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT40.1266624445851805No Hit
GCATCAATCATCGCAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT40.1266624445851805No Hit
GAATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCAT40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGGCTCGAGAAATCACGAGATGTCCCTCTT40.1266624445851805No Hit
GCATAAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCATGAGATGTCCCTCTT40.1266624445851805No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCCCTT40.1266624445851805No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)