FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008130469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008130469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6593
Total Bases944 kbp
Sequences flagged as poor quality0
Sequence length141-145
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT273741.513726679811924No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT148822.569391779159716No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGCCATGTTGTAGAA4677.083270134991658No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATGATCTCCATGTTGTAGAACCA731.1072349461550128No Hit
GCATCAATCATCAAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG370.5612012740785681No Hit
GCATCAATCATACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG260.39435765205521006No Hit
GCATCAATCTTCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT220.33368724404671624No Hit
GCATCAATATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG220.33368724404671624No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGCCATGTTGTAGAAC180.27301683603822235No Hit
ACGTTGCCGTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT170.2578492340360989No Hit
ACGTTGCCTTTATCCTCCCGACGTACATGATCTCCATGTTGTAGAACCAT170.2578492340360989No Hit
ACGTTGCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG170.2578492340360989No Hit
GCATCATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG160.24268163203397544No Hit
CGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG140.21234642802972853No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGCCCCTCTT130.19717882602760503No Hit
GATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG130.19717882602760503No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCACTCTT120.18201122402548156No Hit
ACGTTGCCTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG120.18201122402548156No Hit
GCATCAATCATCACAGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG110.16684362202335812No Hit
GCATCAATCATCACGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG110.16684362202335812No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTT110.16684362202335812No Hit
GCATCAATCATCCAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG100.15167602002123465No Hit
GCATCAATCATCACAGGGTTGCCAGCTCACTAATGGCCATGTTGTAGAAC100.15167602002123465No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGTCCATTCGATCTGGT100.15167602002123465No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGGTGTCCCTCTT100.15167602002123465No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATATGGT100.15167602002123465No Hit
GCTCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG90.13650841801911118No Hit
GCATCAATCATCACCGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT90.13650841801911118No Hit
ACTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG90.13650841801911118No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAGTCACGAGATGTCCCTCTT90.13650841801911118No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGACCCATTCGATCTGGT90.13650841801911118No Hit
GCATCAATCATCACAGGTTTGGCCAGCTCACTAATGGCCATGTTGTAGAA90.13650841801911118No Hit
GCATCAATCATCACAGGGTTGGACTCGGGAAATCACGAGATGTCCCTCTT90.13650841801911118No Hit
AGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG80.12134081601698772No Hit
GCATAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTTG80.12134081601698772No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCCTTCGATCTGGT80.12134081601698772No Hit
ACGTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG80.12134081601698772No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCAT80.12134081601698772No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGCTGTCCCTCTT70.10617321401486426No Hit
ACGTTGCCTTTAACCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT70.10617321401486426No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTGCCTCTT70.10617321401486426No Hit
GCATCAATCATCACAGGGTTGGGCTCGAGAAATCACGAGATGTCCCTCTT70.10617321401486426No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGTGCCCATTCGATCTGGT70.10617321401486426No Hit
ACGGTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT70.10617321401486426No Hit
GCATCAATCATCAAGGGTTGGCCAGCTCACTAATGGCCATGTTGTAGAAC70.10617321401486426No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGCGGGGCCCATTCGATCTGGT70.10617321401486426No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGACCCTCTT70.10617321401486426No Hit
GCATCAATCGTCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCTCTT70.10617321401486426No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCACGAGATGTCCCCCTT70.10617321401486426No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTCGT70.10617321401486426No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)