FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2936
Total Bases425.1 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA127343.358310626702995No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATC64722.036784741144412No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTC2729.264305177111716No Hit
CCATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCTGCATAGACCAA712.4182561307901906No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT311.055858310626703No Hit
CATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG190.6471389645776567No Hit
CCATTAGTGAGCTGGCAACCCTGTGATGATTGATGCCTGCATAGACCAAG180.6130790190735695No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTATGCCTGCATAGACCAAG180.6130790190735695No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATAGATGCCTGCATAGACCAA160.544959128065395No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATGATGCCTGCATAGACCAAG140.4768392370572207No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCTGCATAGACCAAG130.44277929155313356No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATATTGATGCCTGCATAGACCAAG120.4087193460490463No Hit
CCATTAGTGAGCTGGCCAACCCTGTATGATTGATGCCTGCATAGACCAAG110.3746594005449591No Hit
CCATTAGTGAGCTGGCAAACCCTGTGATGATTGATGCCTGCATAGACCAA100.3405994550408719No Hit
CCATTAGTGAGCTGGCCAACCCAAGGTTGCTGGCTATACCTCGAGAAATC90.30653950953678477No Hit
CCATTAGTGAGCTGGCCAACCCTGTGAGATTGATGCCTGCATAGACCAAG90.30653950953678477No Hit
CCATTGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG90.30653950953678477No Hit
CCATTAGTGAGTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG90.30653950953678477No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATCCTGCATAGACCAAG90.30653950953678477No Hit
CCATTAGTGAGCTGGCCAACCAAGGTTGCTGGCTATACCTCGAGAAATCG80.2724795640326975No Hit
CCTTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG80.2724795640326975No Hit
CCATAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG80.2724795640326975No Hit
CCATTAGTGGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG80.2724795640326975No Hit
CCATTAGTAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG70.23841961852861035No Hit
CCATTAGTGACTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG70.23841961852861035No Hit
CCATTAGTGAGCTGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG70.23841961852861035No Hit
CCATTAGTGAGCGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG70.23841961852861035No Hit
CCATTAGTGAGCTGGCCAACCCTTGATGATTGATGCCTGCATAGACCAAG60.20435967302452315No Hit
CCATTAGTGAGCTGGCCAACCCTGGATGATTGATGCCTGCATAGACCAAG60.20435967302452315No Hit
CCTTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG50.17029972752043596No Hit
CCATTATGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG50.17029972752043596No Hit
CCATTAGTGACTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG50.17029972752043596No Hit
CCATTAGGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG50.17029972752043596No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGTTGATGCCTGCATAGACCAAG50.17029972752043596No Hit
CCATTAGTGAGCTGGCCAACCCGTGATGATTGATGCCTGCATAGACCAAG50.17029972752043596No Hit
CCATTGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG50.17029972752043596No Hit
CATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG50.17029972752043596No Hit
AGATATGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT40.13623978201634876No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGAGCCTGCATAGACCAAG40.13623978201634876No Hit
CCATTAGTGAGCTGGCTAACCCTGTGATGATTGATGCCTGCATAGACCAA40.13623978201634876No Hit
CCATTAGTGAGCTGGCCAACCTGTGATGATTGATGCCTGCATAGACCAAG40.13623978201634876No Hit
CCATTAGTGAGTTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATC40.13623978201634876No Hit
CCATTAGTGAGCTGGCCACCCTGTGATGATTGATGCCTGCATAGACCAAG40.13623978201634876No Hit
AGATCATGTACGTCGGGGAGGATAAAGCAACGTCTGCATAGACCAAGTCT40.13623978201634876No Hit
CCATTAGTGAGCTGGCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG30.10217983651226158No Hit
CCATTAGTGGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG30.10217983651226158No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACAAA30.10217983651226158No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACTCTGCATAGACCAAGTCTC30.10217983651226158No Hit
CCATTAGTGAGCTGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG30.10217983651226158No Hit
AGATCATGTACGTCGGGGGGATAAAGGCAACGTCTGCATAGACCAAGTCT30.10217983651226158No Hit
CCATTAGTGAGCTGGTCAACCCTGTGATGATTGATGCCTGCATAGACCAA30.10217983651226158No Hit
CCATTAGTGAGCTGGCCAAACCAAGGATGCTGGCTATACCTCGAGAAATC30.10217983651226158No Hit
AGATCATGTACGTCGGGGAGGATAAAAGGCAACGTCTGCATAGACCAAGT30.10217983651226158No Hit
ACATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA30.10217983651226158No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCCGGCTATACCTCGAGAAATC30.10217983651226158No Hit
CCATTAGTGAGCTGGCCAACCCTATGATGATTGATGCCTGCATAGACCAA30.10217983651226158No Hit
CCATTAGTGAGCTGGCCAACCCTGAGATGATTGATGCCTGCATAGACCAA30.10217983651226158No Hit
CCATTAGTGAGCGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG30.10217983651226158No Hit
AGATCATGTACGTCGGGGATAAAGGCAACGTCTGCATAGACCAAGTCTCT30.10217983651226158No Hit
CCATTAGTGAGCTGGCCAACCCTGTGTGATTGATGCCTGCATAGACCAAG30.10217983651226158No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)