FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1544
Total Bases223.8 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA92459.84455958549223No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTC15710.16839378238342No Hit
CCATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCTGCATAGACCAA855.505181347150259No Hit
CATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG191.2305699481865284No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT191.2305699481865284No Hit
CCATTAGTGAGCTGGCCAACCCTGTATGATTGATGCCTGCATAGACCAAG140.9067357512953367No Hit
CCATTAGTGAGCTGGCAACCCTGTGATGATTGATGCCTGCATAGACCAAG120.7772020725388601No Hit
CCATTATGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG100.6476683937823834No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATGATGCCTGCATAGACCAAG100.6476683937823834No Hit
CCATTAGTGAGCTGGCCAACCTGTGATGATTGATGCCTGCATAGACCAAG80.5181347150259068No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATAGATGCCTGCATAGACCAA70.45336787564766834No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCTGCATAGACCAAG70.45336787564766834No Hit
AGATCATGTACGTCGGGGAGGATAAAAGGCAACGTCTGCATAGACCAAGT60.38860103626943004No Hit
AGATCATGTACGTCGGGGGGATAAAGGCAACGTCTGCATAGACCAAGTCT50.3238341968911917No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGAGCCTGCATAGACCAAG50.3238341968911917No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGAATGCCTGCATAGACCA50.3238341968911917No Hit
CCATTAGTGAGCTGACCAACCCTGTGATGATTGATGCCTGCATAGACCAA50.3238341968911917No Hit
CCATAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG50.3238341968911917No Hit
CCATTAGTGAGCTGGCCAACCCTGGATGATTGATGCCTGCATAGACCAAG50.3238341968911917No Hit
CCATTAGTGAGTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG50.3238341968911917No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATCCTGCATAGACCAAG50.3238341968911917No Hit
CCATTAGTGACTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG40.2590673575129534No Hit
CCATTAGTGAGCTGGCCAACCCTGTGAGATTGATGCCTGCATAGACCAAG40.2590673575129534No Hit
CCATTGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG40.2590673575129534No Hit
CCATTAGTGAGCTGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG40.2590673575129534No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTATGCCTGCATAGACCAAG40.2590673575129534No Hit
CCATTAGTGAGCTGGCCACCCTGTGATGATTGATGCCTGCATAGACCAAG40.2590673575129534No Hit
CCATTAGTAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG30.19430051813471502No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATATTGATGCCTGCATAGACCAAG30.19430051813471502No Hit
AGATCATGTACGTCGGGGAGGATAAGGCAACGTCTGCATAGACCAAGTCT30.19430051813471502No Hit
CCATTAGTGAGCTGGCCAACCCTTGATGATTGATGCCTGCATAGACCAAG30.19430051813471502No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACAAA30.19430051813471502No Hit
CCATTAGGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG30.19430051813471502No Hit
CCATTAGTGAGCTGGCCAACCCGTGATGATTGATGCCTGCATAGACCAAG30.19430051813471502No Hit
AGATCATGTAGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT30.19430051813471502No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATTCCTGCATAGACCAA30.19430051813471502No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGTGCCTGCATAGACCAAG30.19430051813471502No Hit
CCATTAGTGGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG30.19430051813471502No Hit
AGATCATGTACGTCGAGGATAAAGGCAACGTCTGCATAGACCAAGTCTCT20.1295336787564767No Hit
AGATATGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT20.1295336787564767No Hit
CCTTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG20.1295336787564767No Hit
CCATTAGTGAGCTGGCAAACCCTGTGATGATTGATGCCTGCATAGACCAA20.1295336787564767No Hit
CCATTAGTGAGCTGGCCAAACTGTGATGATTGATGCCTGCATAGACCAAG20.1295336787564767No Hit
AGATCATGTACGTGGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTC20.1295336787564767No Hit
CCATTAGTGAGCTGGCCAACTCTGTGATGATTGATGCCTGCATAGACCAA20.1295336787564767No Hit
CCATTAGTGAGCGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG20.1295336787564767No Hit
CATAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAGT20.1295336787564767No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACAAAGTC20.1295336787564767No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACTCTGCATAGACCAAGTCT20.1295336787564767No Hit
AGATCATGTACGTCGGGGATAAAGGCAACGTCTGCATAGACCAAGTCTCT20.1295336787564767No Hit
AGATCTGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT20.1295336787564767No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)