FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1195
Total Bases173.2 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA69057.74058577405857No Hit
GCATCAATCATCACAGGTTTGGCCAGCTCACTAATGGGAATCCTGTAGAA796.610878661087866No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATGATCTGAATCCTGTAGAACCA746.192468619246862No Hit
GCATCAATCATCACAGGGTGGCCAGCTCACTAATGGGAATCCTGTAGAAC90.7531380753138075No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGAATCCTGTAGAAC90.7531380753138075No Hit
GCATCAATCATCACAGGGTTGGCCACTCACTAATGGGAATCCTGTAGAAC80.6694560669456067No Hit
GCATCAATCATCACAGGGTTGCCAGCTCACTAATGGGAATCCTGTAGAAC80.6694560669456067No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACAATGGGAATCCTGTAGAAC70.5857740585774058No Hit
GCATAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC60.502092050209205No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAAGGGAATCCTGTAGAAC60.502092050209205No Hit
CATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC60.502092050209205No Hit
GCATCATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC60.502092050209205No Hit
ACGTTGCCTTTATCCTCCCGACGTACATGATCTGAATCCTGTAGAACCAT60.502092050209205No Hit
GCATCAATCATCACCGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA60.502092050209205No Hit
GCATCAATCTCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC60.502092050209205No Hit
ACGTTGCCTTTATCCTCGACGTACATGATCTGAATCCTGTAGAACCATGT50.41841004184100417No Hit
GCTCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC50.41841004184100417No Hit
GCATCAATCATACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC50.41841004184100417No Hit
GCATCAATCATCCAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC50.41841004184100417No Hit
GCATCAATCATCACAGGGTTGGCCAGCCACTAATGGGAATCCTGTAGAAC40.33472803347280333No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTATGGGAATCCTGTAGAAC40.33472803347280333No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGCCGCCTGTAGAA40.33472803347280333No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCATAATGGGAATCCTGTAGAAC40.33472803347280333No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCGCTAATGGGAATCCTGTAGAA30.2510460251046025No Hit
GCATCAATCATCACAGGGTTGGCCGGCTCACTAATGGGAATCCTGTAGAA30.2510460251046025No Hit
GCATAAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA30.2510460251046025No Hit
ACGTTGCCTTTTATCCTCCCCGACGTACATGATCTGAATCCTGTAGAACC30.2510460251046025No Hit
GCATCAATCATCACAGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC30.2510460251046025No Hit
GCATCAATCATCACAGGGTTGGTGGCAGCTGGCAGTGGTTGGTGAATGTC30.2510460251046025No Hit
GCATCAATCATCACAGGGTTTGCCAGCTCACTAATGGGAATCCTGTAGAA30.2510460251046025No Hit
GCATCAATCATCACAGGGTTGGCCCGCTCACTAATGGGAATCCTGTAGAA30.2510460251046025No Hit
GCATCAATCATCACAGGGTTGGCCAGCTACTAATGGGAATCCTGTAGAAC30.2510460251046025No Hit
GCATCAATCATCAAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC30.2510460251046025No Hit
ACATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA20.16736401673640167No Hit
ACGTTGCCTTTATCCCCCCGACGTACATGATCTGAATCCTGTAGAACCAT20.16736401673640167No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGAAGAA20.16736401673640167No Hit
ACGTTCCTTTATCCTCCCCGACGTACATGATCTGAATCCTGTAGAACCAT20.16736401673640167No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGTT20.16736401673640167No Hit
GCATCAATCATCACAGGTTTGGCCAGCTCACTAATGGAATCCTGTAGAAC20.16736401673640167No Hit
GCATCAATCATCACGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.16736401673640167No Hit
GCATCAATGATCACAGGGTTGGCCAGCTCACTATTGGGAATCCTGTAGAA20.16736401673640167No Hit
GCATCAATCATCACAGGGTTGGCCAGTCACTAATGGGAATCCTGTAGAAC20.16736401673640167No Hit
GCATCATCATCACAGGGTTGCCAGCTCACTAATGGGAATCCTGTAGAACC20.16736401673640167No Hit
GCATCAGTCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA20.16736401673640167No Hit
GCATCAATCATCACAGGGTTGACCAGCTCACTAATGGGAATCCTGTAGAA20.16736401673640167No Hit
GCATCAATATCACAGGTTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.16736401673640167No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATATCTGAATCCTGTAGAACCAT20.16736401673640167No Hit
GATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.16736401673640167No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)