FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1189
Total Bases172.4 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA79366.69470142977292No Hit
CCATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCTGCATAGACCAA726.055508830950378No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTC393.280067283431455No Hit
CCATTAGTGAGCTGGCCAACCCTGTATGATTGATGCCTGCATAGACCAAG131.0933557611438183No Hit
CCATTAGTGAGCTGGCAACCCTGTGATGATTGATGCCTGCATAGACCAAG121.0092514718250631No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATGATGCCTGCATAGACCAAG90.7569386038687973No Hit
CATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG90.7569386038687973No Hit
CCATTAGTGGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG90.7569386038687973No Hit
CCATTAGTGAGTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG70.5887300252312868No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATAGATGCCTGCATAGACCAA60.5046257359125316No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCTGCATAGACCAAG60.5046257359125316No Hit
CCATTAGTGAGCTGGCAAACCCTGTGATGATTGATGCCTGCATAGACCAA60.5046257359125316No Hit
CCATTAGTGAGCGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG50.42052144659377627No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTATGCCTGCATAGACCAAG50.42052144659377627No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATCCTGCATAGACCAAG50.42052144659377627No Hit
CCATTAGTAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG40.33641715727502103No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATATTGATGCCTGCATAGACCAAG40.33641715727502103No Hit
CCATTAGTGAGTTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA40.33641715727502103No Hit
CCTTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG40.33641715727502103No Hit
CCATTAGTGAGCTGGCCAACCCTTGATGATTGATGCCTGCATAGACCAAG40.33641715727502103No Hit
CCATTATGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG40.33641715727502103No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTCT40.33641715727502103No Hit
AGATCATGTACGTCGGGGATAAAGGCAACGTCTGCATAGACCAAGTCTCT40.33641715727502103No Hit
CCATTAGTGGGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA30.2523128679562658No Hit
CCATAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGAGCTGGCCAACCCTGGATGATTGATGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGAGCTGGCCAACCCTGTGTGATTGATGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGAGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGAGCTGGCCACCCTGTGATGATTGATGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGAGCTGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGAGTGGCCAAACCTGTGATGATTGATGCCTGCATAGACCAAG30.2523128679562658No Hit
CCATTAGTGACTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCTGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCAAAGACCAA20.16820857863751051No Hit
CCATTAGTGAGCTGCCCAACCCTGTGATGATTGATGCCTGCATAGACCAA20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACAAA20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAAACTGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
CCATTAGTGAGCCGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAA20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTAATGCCTGCATAGACCAA20.16820857863751051No Hit
CCATTGTGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
CCATTAGGAGCTGGCCAACCCTGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
AGATCATGTACGTGGGGGAGGATAAAGGCAACGTCTGCATAGACCAAGTC20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGTTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGACTGCATAGACCAA20.16820857863751051No Hit
CCATTAGTGAGCTGGCCAACCCGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit
CATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCTGCATAGACCAAG20.16820857863751051No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)