FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1262
Total Bases182.9 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA73958.55784469096672No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATGATCTGAATCCTGTAGAACCA796.259904912836767No Hit
GCATCAATCATCACAGGTTTGGCCAGCTCACTAATGGGAATCCTGTAGAA705.54675118858954No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGAATCCTGTAGAAC161.2678288431061806No Hit
GCATCAATATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC110.8716323296354992No Hit
GCATCATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC100.7923930269413629No Hit
GCATCAATCATCACAGGGTTGCCAGCTCACTAATGGGAATCCTGTAGAAC100.7923930269413629No Hit
ACGTTGCCTTTATCCTCCCGACGTACATGATCTGAATCCTGTAGAACCAT90.7131537242472267No Hit
GCATCAATCATACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC70.554675118858954No Hit
GCATCAATCATCACGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC60.4754358161648178No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCATAATGGGAATCCTGTAGAAC60.4754358161648178No Hit
GCATCAATCATCACAGGGTTGGCCAGCCACTAATGGGAATCCTGTAGAAC50.39619651347068147No Hit
CATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC50.39619651347068147No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTATGGGAATCCTGTAGAAC50.39619651347068147No Hit
ACGTTGCCTTTATCCCCGACGTACATGATCTGAATCCTGTAGAACCATGT50.39619651347068147No Hit
GCATCAATCATCCAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC50.39619651347068147No Hit
GATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC50.39619651347068147No Hit
GCATCAATCATCACAGGGTGGCCAGCTCACTAATGGGAATCCTGTAGAAC40.31695721077654515No Hit
GCATCAATCATCACAGGGTTGGCCACTCACTAATGGGAATCCTGTAGAAC40.31695721077654515No Hit
GCTCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC40.31695721077654515No Hit
GCATCAATCATCACAGGGTTGGCCAGTTCACTAATGGGAATCCTGTAGAA40.31695721077654515No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCCTAATGGGAATCCTGTAGAAC40.31695721077654515No Hit
GCATCAATCATCACAGGGTTGGCCAGCTACTAATGGGAATCCTGTAGAAC40.31695721077654515No Hit
GCATCAATCATCAAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC40.31695721077654515No Hit
GCATAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC30.2377179080824089No Hit
ACGTTGCCTTTTATCCTCCCCGACGTACATGATCTGAATCCTGTAGAACC30.2377179080824089No Hit
GCATCAATCATCACAGGGTTGGCAGCTCACTAATGGGAATCCTGTAGAAC30.2377179080824089No Hit
ACGTTGCCTTTATCCCCCCGACGTACATGATCTGAATCCTGTAGAACCAT30.2377179080824089No Hit
ACGTTGCCTTTATCCTCGACGTACATGATCTGAATCCTGTAGAACCATGT30.2377179080824089No Hit
GCATCAATCATCACAGGGTTGGCCACTCACTAATGGAATCCTGTAGAACC30.2377179080824089No Hit
GCGTCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA30.2377179080824089No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACAATGGGAATCCTGTAGAAC30.2377179080824089No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCGCTAATGGGAATCCTGTAGAA20.15847860538827258No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAAGGGAATCCTGTAGAAC20.15847860538827258No Hit
GCATCAAACATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA20.15847860538827258No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAAGGAATCCTGTAGAACC20.15847860538827258No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCAGTAATGGGAATCCTGTAGAA20.15847860538827258No Hit
ACGTTGCCTTTATCCTCCCCGACGTCATGATCTGAATCCTGTAGAACCAT20.15847860538827258No Hit
GCATCAATCATCACAGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.15847860538827258No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATGATCAGAATCCTGTAGAACCA20.15847860538827258No Hit
GCATCAATCATCACAGGTTTGGCCAGCTCACTAATGGAATCCTGTAGAAC20.15847860538827258No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGCA20.15847860538827258No Hit
GCATCAATCATCACCGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA20.15847860538827258No Hit
GCATCAATCATCCCAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAA20.15847860538827258No Hit
GCATCAATCTCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.15847860538827258No Hit
ACGTTGCCTTTATCCTCCCCCACGTACATGATCTGAATCCTGTAGAACCA20.15847860538827258No Hit
GCACAATCATCACAGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.15847860538827258No Hit
GCATCAATCATCACAGGGTTTGGCCAGCTCACTAATGGGAATCCTGTAGA20.15847860538827258No Hit
GCATAAATCATCACAGGTTTGGCCAGCTCACTAATGGGAATCCTGTAGAA20.15847860538827258No Hit
GCATCAATCATCACACGGTTGGCCCGCTCACTAATGGGAATCCTGTAGAT20.15847860538827258No Hit
GCATCAATCATCATGGGTTGGCCAGCTCACTAATGGGAATCCTGTAGAAC20.15847860538827258No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)