FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1175
Total Bases170.3 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAA64054.46808510638298No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCGAGTTAGACCAAGTC1008.51063829787234No Hit
CCATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCGAGTTAGACCAA816.893617021276596No Hit
AGATCATGTACGTCGGGGAGAGTACGGCGTCGATTCTAAAGTTGGGAGGA332.8085106382978724No Hit
CATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG90.7659574468085106No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACGTCGAGTTAGACCAAGTCT80.6808510638297872No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATAGATGCCGAGTTAGACCAA80.6808510638297872No Hit
AGATCATGTACGTCGGGGATAAAGGCAACGTCGAGTTAGACCAAGTCTCT70.5957446808510638No Hit
CCATTAGTGAGCTGGCCAACCCTGGATGATTGATGCCGAGTTAGACCAAG70.5957446808510638No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATGATGCCGAGTTAGACCAAG60.5106382978723404No Hit
AGATCATGTACGTCGGGGAGAGTACGGCGTCGATTCTAAAGTTGGTGGGA50.425531914893617No Hit
CATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCGAGTTAGACCAAG50.425531914893617No Hit
CCATTAGTGAGCTGGCCAACCCTGTATGATTGATGCCGAGTTAGACCAAG50.425531914893617No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATATTGATGCCGAGTTAGACCAAG50.425531914893617No Hit
CCATTATGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG40.3404255319148936No Hit
CCATTAGTGAGCTGGCAAACCCTGTGATGATTGATGCCGAGTTAGACCAA40.3404255319148936No Hit
CCATTAGTGAGCTGGCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG40.3404255319148936No Hit
CCATTAGTGAGCTGGCCAACCCTTGATGATTGATGCCGAGTTAGACCAAG40.3404255319148936No Hit
CCATTGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG40.3404255319148936No Hit
CCATTAGTGAGCTGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG40.3404255319148936No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACAAA40.3404255319148936No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCAGAGTTAGACCAA30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGATAGACCAA30.2553191489361702No Hit
CCATTAGTAGCTGGCCAAACCTGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAACCCGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAACCTGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAAACCCTGTGATGATTGATGCCGAGTTAGACCA30.2553191489361702No Hit
CCATTAGTAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATCCGAGTTAGACCAAG30.2553191489361702No Hit
CCTTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG30.2553191489361702No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATATGCCGAGTTAGACCAAGT20.1702127659574468No Hit
CCATAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG20.1702127659574468No Hit
CCATTAGTGAGCGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG20.1702127659574468No Hit
CCATTAGTGAGCTGGCCAACCCTGTGAGATTGATGCCGAGTTAGACCAAG20.1702127659574468No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGGTTGATGCCGAGTTAGACCAA20.1702127659574468No Hit
CCATTAGTGAGCAGGCCAAACCTGTGATGATTGATGCCGAGTTAGACCAA20.1702127659574468No Hit
CCATTAGTGAGCTGGCTAACCCTGTGATGATTGATGCCGAGTTAGACCAA20.1702127659574468No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCGAGATAGACCAAGTC20.1702127659574468No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGTGCCGAGTTAGACCAAG20.1702127659574468No Hit
AGATCATGTACGTCGGGAGGATAAAGGCAACGTCGAGTTAGACAAAGTCT20.1702127659574468No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTAAGACCAA20.1702127659574468No Hit
CCATTAGTGAGCTGGCCAAACCAGGGAAGACGCTGACATCAAGCACAATT20.1702127659574468No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATC20.1702127659574468No Hit
AGATCATGTACGTCGGGGGGATAAAGGCAACGTCGAGTTAGACCAAGTCT20.1702127659574468No Hit
AGATCATGTACGTCGGGGACAGGCTCAGAGGAAGTTAGGCACCTCTGCAA20.1702127659574468No Hit
CCATTAGTGAGTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG20.1702127659574468No Hit
CCATTAGTGAGCTGGTCAACCCTGTGATGATTGATGCCGAGTTAGACCAA20.1702127659574468No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)