FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5404
Total Bases781.5 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATC204937.916358253145816No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAA117021.650629163582533No Hit
AGATCATGTACGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAG77914.415247964470762No Hit
CCATTAGTGAGCTGGCCAAACCTGTGATGATTGATGCCGAGTTAGACCAA1102.0355292376017764No Hit
AGATCATGTACGTCGGGGAGGATAAAGGCAACGTCGAGTTAGACCAAGTC921.7024426350851223No Hit
CCATTAGTGAGCTGGCCAACCCAAGGTTGCTGGCTATACCTCGAGAAATC470.8697261287934863No Hit
CATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG390.7216876387860843No Hit
CCATAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG180.33308660251665434No Hit
CATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG170.3145817912657291No Hit
CCATTAGTGAGCTGGCCAACCAAGGTTGCTGGCTATACCTCGAGAAATCG150.27757216876387864No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATAGATGCCGAGTTAGACCAA150.27757216876387864No Hit
CCATAGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG140.2590673575129534No Hit
CCATTAGTGGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG140.2590673575129534No Hit
CCATTAGTGAGCTGGCCAAGGAGGGAGATGATCGCCCCTTCTTCTGGCTC140.2590673575129534No Hit
AGATCATGTACGTCGGGGAGAGTACGGCGTCGATTCTAAAGTTGGGAGGA140.2590673575129534No Hit
CCATTGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG130.24056254626202814No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTATGCCGAGTTAGACCAAG110.20355292376017764No Hit
CCATTAGTGAGCTGGCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG110.20355292376017764No Hit
CCATTAGTGAGTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG110.20355292376017764No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCAGGCTATACCTCGAGAAATC100.1850481125092524No Hit
CCATTAGTGAGCTGGCCAACCCTGGATGATTGATGCCGAGTTAGACCAAG100.1850481125092524No Hit
CCATTAGTGACTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG100.1850481125092524No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCCCGAGAAATC100.1850481125092524No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATATTGATGCCGAGTTAGACCAAG100.1850481125092524No Hit
AGATCATGTACTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG80.1480384900074019No Hit
CCATTGTGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG80.1480384900074019No Hit
CCATTAGTGAGCTGGCCACCCTGTGATGATTGATGCCGAGTTAGACCAAG80.1480384900074019No Hit
CCATTAGTGGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG80.1480384900074019No Hit
CCATTAGGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG80.1480384900074019No Hit
CCATTAGTGAGCTGGCCAACCCTTGATGATTGATGCCGAGTTAGACCAAG80.1480384900074019No Hit
CCATTATGAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG70.1295336787564767No Hit
CCTTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG70.1295336787564767No Hit
CCATTAGTGAGCTGGCCAAACCCTGTGATGATTGATGCCGAGTTAGACCA70.1295336787564767No Hit
CCATTAGTGAGCTGGCCAACCCTGTATGATTGATGCCGAGTTAGACCAAG70.1295336787564767No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATGCGAGTTAGACCAAG70.1295336787564767No Hit
CCATTAGTAGCTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG70.1295336787564767No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATTGATCCGAGTTAGACCAAG70.1295336787564767No Hit
AGATCATGTACGTCGGGGCGTCCGCAGCGTCACACAGAAGCATATCCAGG70.1295336787564767No Hit
AGATCATGTAGTCGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG70.1295336787564767No Hit
AGATCATGTACGTCGGGGAGAGTACGGCGTCGATTCTAAAGTTGGTGGGA70.1295336787564767No Hit
CCATTAGTGAGCTGGCCAACCCTGTGATGATGATGCCGAGTTAGACCAAG70.1295336787564767No Hit
AGATCATGTACGTGGGGACGTCCGCAGCGTCACACAGAAGCATATCCAGG70.1295336787564767No Hit
CCATTAGTGAGTGGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG70.1295336787564767No Hit
AGATCATGTACGTCGGGGACGTCCGCAGTGTCACACAGAAGCATATCCAG70.1295336787564767No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCCGGCTATACCTCGAGAAATC60.11102886750555144No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATGCCTCGAGAAATC60.11102886750555144No Hit
CCATTAGTGAGCTGGCCAACCCTGTGTGATTGATGCCGAGTTAGACCAAG60.11102886750555144No Hit
CCATTAGTGAGCTGGCCAAACCAGGGTTGCTGGCTATACCTCGAGAAATC60.11102886750555144No Hit
CCATTAGTGAGCTGGCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG60.11102886750555144No Hit
CCATTATGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG60.11102886750555144No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGGAATC60.11102886750555144No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTATATCTCGAGAAATC60.11102886750555144No Hit
CCATTAGTAGCTGGCCAAACCAAGGTTGCTGGCTATACCTCGAGAAATCG60.11102886750555144No Hit
CCATTAGTGAGCTGCCAACCCTGTGATGATTGATGCCGAGTTAGACCAAG60.11102886750555144No Hit
CCATTAGTGAGCTGGCCAAACCAAGGTTGCTGGCTACACCTCGAGAAATC60.11102886750555144No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)