FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008131923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008131923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1896
Total Bases273.5 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC59

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT47725.158227848101266No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAA37819.936708860759495No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTT472.478902953586498No Hit
GCATCAATCATCACAGGTTTGGCCAGCTCACTAATGGGGTCTTTGTAGAA392.0569620253164556No Hit
ACGTTGCCGTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT251.3185654008438819No Hit
ACGTTGCCTTTATCCTCCCCGACGTACATGATCTGGTCTTTGTAGAACCA201.0548523206751055No Hit
CCGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT100.5274261603375527No Hit
ACGTTGCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG90.4746835443037975No Hit
GCATCATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC70.3691983122362869No Hit
GCATCAATCATCCAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC70.3691983122362869No Hit
GCATCAATCATCACAGGGTTGGCCAGCTAACTAATGGGGTCTTTGTAGAA60.31645569620253167No Hit
ACGTTGCCTTTATCCTCCCGACGTACATGATCTGGTCTTTGTAGAACCAT60.31645569620253167No Hit
GCATCAATCATACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC50.26371308016877637No Hit
GCATCAATCATCACAGGGTTGGCCACTCACTAATGGGGTCTTTGTAGAAC50.26371308016877637No Hit
GCATCAATCATCACAGGGTTGCCAGCTCACTAATGGGGTCTTTGTAGAAC50.26371308016877637No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGTCTTTGTAGAAC50.26371308016877637No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGCTCTGGT50.26371308016877637No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTAGATCTGGT50.26371308016877637No Hit
ACGTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG50.26371308016877637No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCAGGT50.26371308016877637No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACAATGGGGTCTTTGTAGAAC40.21097046413502107No Hit
GCATCAATCATCACAGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC40.21097046413502107No Hit
ACGTTGCCTTTATCCTCCCAACTTTAGAATCGACGCCGTACTCTCCCCGA40.21097046413502107No Hit
ACGTTGCCTTTATCCTCCCACCAACTTTAGAATCGACGCCGTACTCTCCC40.21097046413502107No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCAGTCGATCTGGT40.21097046413502107No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCCTTCGATCTGGT40.21097046413502107No Hit
ACGTTGCCTTTTTCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT40.21097046413502107No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGTGCCCATTCGATCTGGT30.15822784810126583No Hit
CGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG30.15822784810126583No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGAACTGGT30.15822784810126583No Hit
ACGTTGACTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT30.15822784810126583No Hit
GCATCAATCATCACAGGGGTGGACTCGAGAAATCGCGAGATGTCCCTCTT30.15822784810126583No Hit
ACGTTGCCTATATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT30.15822784810126583No Hit
GCATCAATCATCACAGGGTTTGGCCAGCTCACTAATGGGGTCTTTGTAGA30.15822784810126583No Hit
ACGTTGCCTTTATCCTCCCAGATCCTGGAGTGGGGCCCATTCGATCTGGT30.15822784810126583No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTATGTAGAA30.15822784810126583No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCTTTCGATCTGGT30.15822784810126583No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCGATTCGATCTGGT30.15822784810126583No Hit
ACGTTGCCTTAATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT30.15822784810126583No Hit
GCATCAATCATCACAGGGTTGTCCAGCTCACTAATGGGGTCTTTGTAGAA30.15822784810126583No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCATAATGGGGTCTTTGTAGAAC30.15822784810126583No Hit
GCATCAATCATCACAGGGTTGGCCAGTCACTAATGGGGTCTTTGTAGAAC30.15822784810126583No Hit
ACGTTGCCTTTATCCCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGTT20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCCGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCAATAATGGGGTCTTTGTAGAA20.10548523206751054No Hit
GCATCAACCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAA20.10548523206751054No Hit
GCATCAATCTCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
ACGGTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
ACTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG20.10548523206751054No Hit
GCATCAATCATCACAGGGTTTGCCAGCTCACTAATGGGGTCTTTGTAGAA20.10548523206751054No Hit
ACGTGGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGAAGAA20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATCCGATCTGGT20.10548523206751054No Hit
ACGTTGCCGTTATCCTCCCAGATCCAGGAGTGGGGCCCAGTCGATCTGGT20.10548523206751054No Hit
ACGTTGCCGTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCAGGT20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCCGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
GCATAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAAGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCACAGAGCCTTGGCATGCTCATAGAATTCGGG20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGTTCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGACGATGGAGAGGTCATTGCAGGGACTGCC20.10548523206751054No Hit
ACGTTGCCTTTAACCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGTGGCCCATTCGATCTGGT20.10548523206751054No Hit
ACGTTGCCGTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGAGCTGGT20.10548523206751054No Hit
GCATCAATCATCACGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
GCATCAATAATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAC20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGAACCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAT20.10548523206751054No Hit
ACGTTGCCATTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
CATCAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
GCTCAATCATCACAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGTCCATTCGATCTGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit
ACGCTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGAGCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
GCATCACTCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTT20.10548523206751054No Hit
ACGTTCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATATGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTAATCGGGTCTTTGTAGAA20.10548523206751054No Hit
GCATCAATCATCACAGCGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAA20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATACGATCTGGT20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGGCCAGCTCACTAATGGGGTCTTTGTAGA20.10548523206751054No Hit
GCATCAATCATCACAGGGTTGGCCAGCTCACTTATGGGGTCTTTGTAGAA20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTTGT20.10548523206751054No Hit
ACGATGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGT20.10548523206751054No Hit
ACGTTGCCTTTATCTCCCAGATCCAGGAGTGGGGCCCATTCGATCTGGTG20.10548523206751054No Hit
GCATCAATCATCACAGGGGTGGCCAGCTCACTAATGGGGTCTTTGTAGAA20.10548523206751054No Hit
ACGTTGCCTTTATCCTCCCAGATCCAGGAGTGGGGCCGATTCGATCAGGT20.10548523206751054No Hit
GCATCAATCATCAAGGGTTGGCCAGCTCACTAATGGGGTCTTTGTAGAAC20.10548523206751054No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)