FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008132776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008132776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Total Bases1.4 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAGGCCTCCTAGTGCTCTAGGCTCCTCCTCCGAGCTCCCAGCAGGG330.0No Hit
TGGGTCATGTGGTTCGGAGTCGAGAGGGAAACAGCCCAGAACACCAGCTA220.0No Hit
CTTCCAGGCCTCCTAGTGCTACACTGACGACAGCGATGAGAGTGACAAAC220.0No Hit
TGGGTCATGTGGTTCGGCGATGAGAGTGACAAACTGGAGACCAAGTCTCT110.0No Hit
CTTCCAGGTGCTGTCCCAGTGGGAAATCTGCCTGTCCATCGTCTCCTCCT110.0No Hit
CTTCCAGCCTCCGACCGCCCTCCGATTTCCTCTCCGCTTGCAACCTCCGG110.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)