FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008133193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008133193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39
Total Bases5.6 kbp
Sequences flagged as poor quality0
Sequence length145
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG3076.92307692307693No Hit
CAAGTGTAAGCCTGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTGT12.564102564102564No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGTCTTGTCCCCCCAGGTGTGTG12.564102564102564No Hit
CAAGTGTAAGCCTCGGCAAGCAAGGCCTGGCTTGTCCCCCCAGGTGTGTG12.564102564102564No Hit
TGTCACTTCATCGCTGTCGTCAGAGCACTAGGAGGCCTGGAAGCGTACTT12.564102564102564No Hit
TGTCACTCTCATCGCTGTCGTCAGTGTAGCACTAGGAGGCCTGGAAGCGT12.564102564102564No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCAGGTGTGTGT12.564102564102564No Hit
CAAGTGTTAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG12.564102564102564No Hit
CAAGTGTAAGCCTCGGCAAACAGGCCTGGCTTGTCCCCCCAGGTGTGTGT12.564102564102564No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCCGGCTTGTCCCCCCAGGTGTGTG12.564102564102564No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)