FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008133331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008133331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Total Bases7.9 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG3970.9090909090909No Hit
TGTCACTCTCATCGCTGTCGTGGCACACCGGGAACAGCTTCCCCGCGCGG814.545454545454545No Hit
CAGGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG23.6363636363636362No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCATGGCTTGTCCCCCCAGGTGTGTG11.8181818181818181No Hit
CAAGTGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGCTGTGTG11.8181818181818181No Hit
TGTCACTCTCATCGCTGTCGTGGCACACCGGGAACAGCTTCCCCGCGAGG11.8181818181818181No Hit
TGTCACTCTATCGCTGTCGTGGCACCCCGGGAACAGCTTCCCCGCGCGGC11.8181818181818181No Hit
CAAGTGTAAGCCTGGAAGCGTACTTGTAGAACCATGTCGTCAGTGTAGAT11.8181818181818181No Hit
CAAGAGTAAGCCTCGGCAAACAAGGCCTGGCTTGTCCCCCCAGGTGTGTG11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)