FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008140548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008140548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78
Total Bases11.3 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC3747.43589743589743No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC2329.48717948717949No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTAC45.128205128205128No Hit
AGCACTTGATCAACACCATGTAGACCAAGTCTCTGCTACCGTATGCTGGC22.564102564102564No Hit
AGCACTTAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.282051282051282No Hit
AGCACTTGAATCAACAGGCTCAATTGACTTATGGTTCTGCAGGCTGTACA11.282051282051282No Hit
AGCACTTGAAGCAACAATGACAGCACCATGTAGACCAAGTCTCTGCTACC11.282051282051282No Hit
AGCATTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.282051282051282No Hit
AGCACTTGAATCAACAGTCATCAGAACCATGTACAATATCAAACTGACAC11.282051282051282No Hit
AGCACTTAAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC11.282051282051282No Hit
CGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC11.282051282051282No Hit
AGCACTTGAATCAACAGGCTCCATATCACTGGATTCCTAGAAATTTCAGA11.282051282051282No Hit
AGCACTTGAATCAACAATGATCAGCGCCATGTAGACCAAGTCTCTGCTAC11.282051282051282No Hit
AGCACTTGAAGCAACAATGATTAGCACCATGTAGACCAAGTCTCTGCTAC11.282051282051282No Hit
AGCACTTGAATCAACAATGAGCAGCACCATGTAGACCAAGTCTCTGCTAC11.282051282051282No Hit
AGCACTTGAATCAACAATGATCAGACCATGTAGACCAAGTCTCTGCTACC11.282051282051282No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)