FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008140610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008140610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66
Total Bases9.5 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC3654.54545454545454No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC1827.27272727272727No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTAC34.545454545454546No Hit
AGCACTTGAATCAACACCATGTAGACCAAGTCTCTGCTACCGTACGTAAT34.545454545454546No Hit
AGCACTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.5151515151515151No Hit
AGCACTTGATCAACACCATGTAGACCAAGTCTCTGCTACCGTACGTAATG11.5151515151515151No Hit
AGCACTTAAGCAACAATGATAAGCACCATGTAGACCAAGTCTCTGCTACC11.5151515151515151No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC11.5151515151515151No Hit
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTATCTGCTAC11.5151515151515151No Hit
AGACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC11.5151515151515151No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)