FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008140798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008140798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130
Total Bases18.8 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC6550.0No Hit
AGCACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC3627.692307692307693No Hit
AGCACTTGAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTAC96.923076923076923No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC86.153846153846154No Hit
AGCACTTGAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit
AGCACTTGAAGCAACAATATCAACACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit
AGTACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTAC10.7692307692307693No Hit
AGCACTTGAAGCAACAATGATCAACACCATGTAGACCAAGTCTCTGCTAC10.7692307692307693No Hit
AGCATTAATCAACAGTGATCAGCACCATGTAGACCAAGTCTCTGCTACCG10.7692307692307693No Hit
AGCACTTGAAGCAACAAGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit
AGCACTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit
AGCATTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit
AGCACTTGAATCAACACCATGTAGACCAAGTCTCTGCTACCGTATTCGTT10.7692307692307693No Hit
AGCACTTGAATCAACAATGATCAGCACAATTTAGACCAAGTCTCTGCTAC10.7692307692307693No Hit
GGCACTTGAATCAACAAGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit
AGACTTGAAGCAACAATGATCAGCACCATGTAGACCAAGTCTCTGCTACC10.7692307692307693No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)