FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008140969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008140969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8499
Total Bases1.2 Mbp
Sequences flagged as poor quality0
Sequence length143-145
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAT580068.24332274385222No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG5266.188963407459701No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC3223.7886810212966227No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATT2843.3415695964231085No Hit
AGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGC2132.5061771973173315No Hit
TGGCTCATCTTCAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT550.647134957053771No Hit
TGGCTCATCTTAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT510.6000705965407696No Hit
TGGCTCTCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT470.553006236027768No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG430.5059418755147664No Hit
TGGCTATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT420.4941757853865161No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG360.4235792446170138No Hit
GGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT330.3882809742322626No Hit
TGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT310.3647487939757619No Hit
TGGCTCATTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT250.29415225320625954No Hit
TGGTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT210.24708789269325804No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGGTGAT200.23532180256500765No Hit
TGGCTCATCTTCAAACCGTGGGCAACTCTGGCCGGCCTCTGCTGAATGAC200.23532180256500765No Hit
TGGCTCATCTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT190.22355571243675726No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCGACCCTGTGATGAT170.2000235321802565No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCAGTGATGAT170.2000235321802565No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCCGTGATGAT140.16472526179550534No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGCCCAACCCTGTGATGAT140.16472526179550534No Hit
TGGCTCACTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT140.16472526179550534No Hit
TGGCCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT120.1411930815390046No Hit
TGGCTCATCTTCAAACCGTCCCCTGTTTTGTAGTCCAACCCTGTGATGAT120.1411930815390046No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAA120.1411930815390046No Hit
TGGCTCATCTTCAAACGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT120.1411930815390046No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAGCCCTGTGATGAT110.1294269914107542No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGACGAT110.1294269914107542No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCAAACCCTGTGATGAT110.1294269914107542No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTCTGATGAT100.11766090128250382No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGCGATGAT100.11766090128250382No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGCAGTCCAACCCTGTGATGAT90.10589481115425345No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGGT90.10589481115425345No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTCGTAGTCCAACCCTGTGATGAT90.10589481115425345No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTGGTCCAACCCTGTGATGAT90.10589481115425345No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGAGATGAT90.10589481115425345No Hit
TGGCTCATCTTCAAACCGTCTCCAGTTTTGTAGTCCAACCCTGTGATGAT90.10589481115425345No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAC90.10589481115425345No Hit
AGACCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGCT90.10589481115425345No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)