FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008141183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008141183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences764
Total Bases110.7 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG58376.30890052356021No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG253.2722513089005236No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG233.0104712041884816No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC91.1780104712041886No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGTTGAGGTGTAGAACCATGTCGT91.1780104712041886No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGTTGAGGTGTAGAACCATGTCGT70.9162303664921465No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGTTGAGGTGTAGAACCATGTCGT70.9162303664921465No Hit
AGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGC60.7853403141361256No Hit
TGGCTCATCTTCAAACCGTCTGCATCTGACCTGTTGTTTGAGGTGTAGAA40.5235602094240838No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGTTGAGGTGTAGAACCATGTCGT30.3926701570680628No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAT30.3926701570680628No Hit
CTTCCTCTTCTCAGTAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG30.3926701570680628No Hit
GCTATCCTGCCATGCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATG30.3926701570680628No Hit
GCTATCCTGCCATGCTCCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACC30.3926701570680628No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCAAGTCG20.2617801047120419No Hit
CTTCCTTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCTCTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTGCCGTTGAGGTGTAGAACCATGTCG20.2617801047120419No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCTCTTCGCAGCAGTTGTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT20.2617801047120419No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTCCGTTGAGGTGTAGAACCATGTCGT10.13089005235602094No Hit
CTTCCTCTTCTCAGCGGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGATGAGGTGTAGAACCATGACC10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTTTTCCGTTGAGGTGTAGAACCATGTCGTCAG10.13089005235602094No Hit
CTTCCTCTTCTCAGATGTCCCTCTTGTCACTAACGTTGAGGTGTAGAACC10.13089005235602094No Hit
CTTCCTCTTCTCAGCTGTTGATGTTTCCGTAGAGGTGTATAACAAAGTAG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGCTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTTTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTAAGTTGAGGTGTAGAACCATTTCG10.13089005235602094No Hit
TGGCTCATCTTCAAACCGTCTGACCTGTTGTTTGAGGTGTAGAACCATGT10.13089005235602094No Hit
TGGCTCATCTTCAAACCGTGGGAGCATCAATGTTACCCTGGGAGCCTCAA10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGATGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGATGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
ATTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTCTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCTTGAGGTGTAGAACATGTCGTC10.13089005235602094No Hit
TGGCTCATCTTCAAACCTGGGAGCCTCAATGTTACCCTGGGAGCCTCAAT10.13089005235602094No Hit
GATATCCTGCCATGCTCCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACC10.13089005235602094No Hit
CTTCATCTTCAAAGCAGATGATGTTTAAGTTTACGTTTAGAACAATGTCC10.13089005235602094No Hit
AGACCCCTGGAACTGCCCTGTTGTTTGAGGTGTAGAACCATGTCGTCAGT10.13089005235602094No Hit
CTTCCTCTTCTCAACAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGATGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCTCTTCTCAGCAGATGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT10.13089005235602094No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTTGAGGTGTAGAACCCATGTC10.13089005235602094No Hit
TGGCTCATCTTCAAACCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAACCA10.13089005235602094No Hit
GCTATCCTGCCATGCTGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATG10.13089005235602094No Hit
GCTATCCTGCCATGCTCCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATG10.13089005235602094No Hit
CTTCCTCTTCTCAGCTGGGAGCCTCAATGTTACCCTGGGAGCCTCAATCT10.13089005235602094No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTCCGTTGAGGTGTAGAACCATGCGTC10.13089005235602094No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT10.13089005235602094No Hit
CTTCCTCTTCGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGTCA10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGCGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTACGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCGCAGCAGTTTTGTTTCCGTTGAGGTGTAGAACCATGTCGT10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACAATGTCG10.13089005235602094No Hit
CTTCCTCTTTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT10.13089005235602094No Hit
CTTCCTCTTCTCAGCTGGTGTTGTTTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTTGAGGTGTAGAAACATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGATTCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTGTTCCGTTGAGGTGTAGAACCATGTCGTC10.13089005235602094No Hit
CTTCTCTTCTCAGCTGTTGTTGTTTCCGTTGAGGTGTAGAACCATGTCGT10.13089005235602094No Hit
CTTCCTCTTTCAGCTGGGAGCCTCAATGTTACCCTGGGAGCCTCAATGTT10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGACG10.13089005235602094No Hit
TGGCTCATCTTCAAACCGTCCCAAAGAAGAGTCCTGTGCTTTGAGGTGTA10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTAGAGGTGTAGCACCATGTCG10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCCGTTGAGGTGTAGAACCATGTCG10.13089005235602094No Hit
TGGCTCATCTTCAAACCGAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAA10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTCCGTTGAGGTGTAGAACCATGTCGTC10.13089005235602094No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCGTTGAGGTGTAGAACCATGTCGTC10.13089005235602094No Hit
GCTATCCTGCCATGTCCCTCTTGTCACTAACGTTGAGGTGTAGAACCATG10.13089005235602094No Hit
GCTATCCTGCCATGCTCCAGAGTTGTTGTTTCCGTTGAGGTGTAGAACCA10.13089005235602094No Hit
TGGCTCATCTTCAAACCGTGAGAGCCTCAATGTTACCCTGGGAGCCTCAA10.13089005235602094No Hit
CTTCCTCTTCGCAGCAGTTGTGTTCCGTTGAGGTGTAGAACCATGTCGTC10.13089005235602094No Hit
GCTATCTGCCATGCTGCAGTTGTTGTTTCCGTTGAGGTGTAGAACCATGT10.13089005235602094No Hit
AGACCCCTGGAACTGCTACCTGTGCAGGCACAAGGGTACCTACGGGCTGC10.13089005235602094No Hit
TGGCTCATCTTCAAACCAAGCAGTGGTATCAACGCAGAGTACATGGGAAG10.13089005235602094Clontech SMARTer II A Oligonucleotide (100% over 25bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)