FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008141568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008141568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences738
Total Bases107 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC60

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC58078.59078590785907No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGAACTGGAGACCAAGTCTCTGC385.149051490514905No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC222.9810298102981028No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT111.4905149051490514No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT60.8130081300813009No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT60.8130081300813009No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGAACTGGAGACCAAGTCTCTGCT40.5420054200542005No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT30.40650406504065045No Hit
CGGAAACAACAACTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCTAC30.40650406504065045No Hit
CGGAAACAACAACCGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC20.27100271002710025No Hit
CTGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC20.27100271002710025No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGAACTGGAGACCAAGTCTCTGCT20.27100271002710025No Hit
CGGAAACAACAACTGCTGCATGGCAGGATAGCAACTGGAGACCAAGTCTC20.27100271002710025No Hit
GGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT20.27100271002710025No Hit
CGGAAGCAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC20.27100271002710025No Hit
CGGAAACAACAACTGCTGAGAAGAGAAAGAACTGGAGACCAAGTCTCTGC20.27100271002710025No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT20.27100271002710025No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCAGC20.27100271002710025No Hit
CGAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCTA20.27100271002710025No Hit
CGGAAACAACAACTGCAGCATGGCAGGATAGCAACTGGAGACCAAGTCTC20.27100271002710025No Hit
CGGAAACAACAACTGCTGAGAAGGGAAGAACTGGAGACCAAGTCTCTGCT20.27100271002710025No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCT20.27100271002710025No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAAACTGGAGACCAAGTCTCTGCT20.27100271002710025No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGACTCTGC20.27100271002710025No Hit
CGGAAACAACAACTGCTGACACTGACGACATGGTTCTACACCTCAACGGA10.13550135501355012No Hit
CGGAAACAACAACTGCTAAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CGAAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
GGAAACAACAACTGCTGCGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGA10.13550135501355012No Hit
CGGAAACAACAACTGCACACTGACGACATGGTTCTACACCTCAACGGAAA10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCTA10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCACTGC10.13550135501355012No Hit
CGGAAACAACAACTGCTGAAAGAGGAGAACTGGAGACCAAGTCTCTGCTA10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAGGAGGAAGAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
GGAAACACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCTA10.13550135501355012No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAACAACGCTGAGAAGAGAAGAACTGGAGACCAAGTCTCTGCTA10.13550135501355012No Hit
CAGAAACAACAACTGCAGACAAGAGGAAGAACTCGAGACCAAGTCACAGC10.13550135501355012No Hit
GGAAACAACAACAGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CGGAAACAACAACTGCAGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAACAACTGCTGAAAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGACTCTGCT10.13550135501355012No Hit
CGGAAACAACAACTGATGAAAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CGGAAAGAACAACTGCTGAGAAGATGAAGAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACAAAGTCTCTCG10.13550135501355012No Hit
CGGAAACAACAACTTCTGAGAAGAGAAACAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAACAACTGCTGCACACTGACGACATGTTTCTACAACTCAAGGA10.13550135501355012No Hit
CGGAACAACACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCTA10.13550135501355012No Hit
CGGAAACAACAACAGCTGAGAAGAGGAACAACTGGAGACCAAGACTCTGC10.13550135501355012No Hit
CGGAAACAACAACTGGCGCATGGCAGGATAGCAACTGGAGACCAAGTCTC10.13550135501355012No Hit
CTGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCAGC10.13550135501355012No Hit
ACAACAGGTCAGATGCAGGGGTCTAACTGGAGACCAAGTCTCTGCTACCG10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAAAACTGGAGACCAAGTCTCTGC10.13550135501355012No Hit
CGGAAACAACAACTCTGAGAAGAGGAAGAACTGGAGACCAAGTCTCTGCT10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGACCAAGACTCTCC10.13550135501355012No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGAACTGGAGGCCAAGTCTCTGC10.13550135501355012No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)