FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008141670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008141670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6478
Total Bases934.8 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC49

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCT392960.65143562828034No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC158624.482865081815376No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGTTGCCAAGACCAAGTCTCTGC1812.7940722445199135No Hit
AGACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT220.33961099104661935No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGGGTACTTTTAAAGGTCCTGCT200.30873726458783574No Hit
ACACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT170.2624266748996604No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGCCCTGCT160.2469898116702686No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGTTGCCAAGACCAAGTCTCTGC160.2469898116702686No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGTTGCCAAGACCAAGTCTCTGC150.23155294844087682No Hit
AGCAAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT140.216116085211485No Hit
GCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT130.20067922198209326No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCTCACCCAGCGC110.16980549552330967No Hit
ACACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT100.15436863229391787No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCC100.15436863229391787No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAGAGGTCCTGCT90.1389317690645261No Hit
AGCACAGGACTCTTTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT90.1389317690645261No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAATACTTTTAAAGGTCCTGCT90.1389317690645261No Hit
AAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT80.1234949058351343No Hit
ACAACAGGCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT80.1234949058351343No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAGGGTCCTGCT80.1234949058351343No Hit
AGCACAGGACTCTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT80.1234949058351343No Hit
AGCACAGGACTCTTCTTTGGTATAAAGGGAGTACTTTTAAAGGTCCTGCT70.1080580426057425No Hit
ACAACAGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT70.1080580426057425No Hit
ACAACGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT70.1080580426057425No Hit
ACAAAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT70.1080580426057425No Hit
ACAACAGGTCGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT70.1080580426057425No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACCTTTAAAGGTCCTGCT70.1080580426057425No Hit
CGTTAGTGACAAGAGGGACATCTGAGAAGAGGAAGTTGCCAAGACCAAGT70.1080580426057425No Hit
AGCCAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT70.1080580426057425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)