FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008141854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008141854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19249
Total Bases2.7 Mbp
Sequences flagged as poor quality0
Sequence length142-145
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAACAGGTCAGATGCAGGCCCAGCGGTGTCCCAAGCTCCCACCCAGCGC453023.533690061821392No Hit
CGGAAACAACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCT428122.24011636968154No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC410921.346563457841967No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCT327917.034651150709127No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGTTGCCAAGACCAAGTCTCTGC6533.3923840199490884No Hit
CGGAACAACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCTT730.3792404800249363No Hit
CGAAACAACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCTT410.21299807782222455No Hit
AAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT360.1870227024780508No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGTTGCCAAGACCAAGTCTCTGC340.1766325523403813No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGTTGCCAAGACCAAGTCTCTGC320.16624240220271183No Hit
ACACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT310.16104732713387707No Hit
CGGAAACAACAACTGCTGCGGCGGCGAGAGGACTGGCCCTCCCGGCTCCA300.15585225206504236No Hit
AAACAGGTCAGATGCAGGCCCAGCGGTGTCCCAAGCTCCCACCCAGCGCT290.1506571769962076No Hit
CGGAAACACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCTT280.14546210192737286No Hit
CGTTAGTGACAAGAGGGACATCTGAGAAGAGGAAGTTGCCAAGACCAAGT280.14546210192737286No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT270.14026702685853812No Hit
CGGAAAAACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCTT270.14026702685853812No Hit
ACACAGGTCAGATGCAGGCCCAGCGGTGTCCCAAGCTCCCACCCAGCGCT260.13507195178970335No Hit
CGGAAACAACACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCTT240.12468180165203387No Hit
ACAAAGGTCAGATGCAGGCCCAGCGGTGTCCCAAGCTCCCACCCAGCGCT230.11948672658319913No Hit
AGCACAGGACTCTTCTTTGGCATCAATCATCACAGGGTTGGACTACAAAA220.11429165151436438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)