FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008141951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008141951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences318
Total Bases46.1 kbp
Sequences flagged as poor quality0
Sequence length145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCG22871.69811320754717No Hit
CTTCCTCTTCTCAGATGTCCCTCTTGTCACTAACGCAGTCATGTAGAACC144.40251572327044No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCG123.7735849056603774No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCG92.8301886792452833No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC82.515723270440252No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAT72.20125786163522No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGCAGTCATGTAGAACCATGTCGT41.257861635220126No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT30.9433962264150944No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT20.628930817610063No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGCAGTCATGTAGAACCATGTCGT20.628930817610063No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCG20.628930817610063No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGCAGTCATGTAGAACCATGTCGT20.628930817610063No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
CTTCCTCTTCTCAGCAGTTGCTGTTTCCGCAGTCATGTAGAACCATGTCG10.3144654088050315No Hit
CTCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
CCTCCTCTTCTCAGCAGTTGTTGTGCAGTCATGTAGAACCATGTCGTCAG10.3144654088050315No Hit
CATCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTAG10.3144654088050315No Hit
CTTCCTCTTCTCAGAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
CTTCCTCTTCTCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGTCA10.3144654088050315No Hit
GCTATCCTNNCATGCTCNNNNNNNNNNNNNNNCAGNNNNNNNNNNNNNNN10.3144654088050315No Hit
CTTCCTCTTCTCAGCTGTCCCTCTTGTCACTAACGCAGTCATGTAGAACC10.3144654088050315No Hit
AGACCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGCT10.3144654088050315No Hit
TGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGC10.3144654088050315No Hit
CTTCCTCTTCTTAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCG10.3144654088050315No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
CTCCCTCTTGTCACTAACGCAGTCATGTAGAACCATGTCGTCAGTGTAGA10.3144654088050315No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGGACCATGTCG10.3144654088050315No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGCGT10.3144654088050315No Hit
CTTCCTCTTCTCAGATGTCCCTCCTGTCACTAACGCAGTCATGTAGAACC10.3144654088050315No Hit
CTTCTCTTCGCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
AGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGC10.3144654088050315No Hit
CTTCCTCTTCTCAGCAGGTGTTGTTTCCGCAGTCATGTAGAACCATTTCG10.3144654088050315No Hit
CTTCCCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
CTTCCTTTCTCAGCAGTTGTTGTTTCCGCAGTCATGTAGAACCATGTCGT10.3144654088050315No Hit
CTTCCTCTTCTCAGCTGGGAAGAGGAAGTTGCCAATGCAGCAGTTGTTGT10.3144654088050315No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCAGTCATGGAGAACCATGTCG10.3144654088050315No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCAGTCAAGTAGAACCATGTCGTC10.3144654088050315No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)