FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008142365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008142365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2740
Total Bases397.2 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAT224681.97080291970804No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG642.335766423357664No Hit
TGGCTCATCTTCAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT230.8394160583941607No Hit
TGGCTCATCTTAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT160.583941605839416No Hit
TGGCTCATTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT150.5474452554744526No Hit
TGGCTCATCTTCAAACGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT140.5109489051094891No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGAGATGAT90.3284671532846715No Hit
TGGCTCATCTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT90.3284671532846715No Hit
TGGCTATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT90.3284671532846715No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGGTGAT90.3284671532846715No Hit
TGGTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT90.3284671532846715No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGCCCAACCCTGTGATGAT80.291970802919708No Hit
TGGCTCATCTTCAAACCGTCTCCCGTTTTGTAGTCCAACCCTGTGATGAT70.25547445255474455No Hit
TGGCTCTCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT70.25547445255474455No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG70.25547445255474455No Hit
TGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT70.25547445255474455No Hit
TGGCCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGATT60.21897810218978103No Hit
TGGCTCATCTTCAAACCGTTTCCTGTTTTGTAGTCCAACCCTGTGATGAT60.21897810218978103No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCAGTGATGAT60.21897810218978103No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGACGAT60.21897810218978103No Hit
TGGCTCATCTTCAAACCGCCTCCTGTTTTGTAGTCCAACCCTGTGATGAT50.18248175182481752No Hit
AGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGC50.18248175182481752No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGGT50.18248175182481752No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTGGTCCAACCCTGTGATGAT50.18248175182481752No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGCGATGAT50.18248175182481752No Hit
TGACTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAT40.145985401459854No Hit
TGGCTCATCTTCAAACCGTCTCCTGTCTTGTAGTCCAACCCTGTGATGAT40.145985401459854No Hit
TGGCTCATCTTCAAACCGTCCCCTGTTTTGTAGTCCAACCCTGTGATGAT40.145985401459854No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC40.145985401459854No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCGACCCTGTGATGAT40.145985401459854No Hit
TGGCACATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGATGAT40.145985401459854No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCCGTGATGAT30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTGGGCAACTCTGGCCGGCCTCTGCTGAATGAC30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTTATGAT30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTTCAACCCTGTGATGAT30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTCTGATGAT30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTAATGAT30.10948905109489052No Hit
CTTCCTCTTCTCAGCTGGGAGGCATGGGTTTCCGCCCCCCCTCCCCACTT30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAGCCCTGTGATGAT30.10948905109489052No Hit
TGGCTCATCTTCAAACCGTCTCCTGCTTTGTAGTCCAACCCTGTGATGAT30.10948905109489052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)