FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008142631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008142631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193
Total Bases27.9 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC9951.29533678756477No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG3618.65284974093264No Hit
AGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGC2412.435233160621761No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG42.072538860103627No Hit
AGACCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACCTACGGGCTGCT31.5544041450777202No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACGAGGGTACCTACGGGCTGC21.0362694300518136No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCATAAGGGTACCTACGGGCTGC21.0362694300518136No Hit
CTTCCTCTTCTCAGCTGTCCCTCTTGTCACTAACGTCCAACTGTAGAACC21.0362694300518136No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGTCCAACTGTAGAACCATGTCGT10.5181347150259068No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGTCCAACTGTAGAACCATGTCGT10.5181347150259068No Hit
CTTCCTCTTCTCAGCTGGGACTACAGGCGTGTGCCACCATGCCTGGCTAA10.5181347150259068No Hit
CTTCCTCTTCTCAGAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCGT10.5181347150259068No Hit
AGACCCCTGGAACTGCTACATGCGCGGGCACAAGGGTACCTACGGGCTGC10.5181347150259068No Hit
AACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGCT10.5181347150259068No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCGTCCAACTGTAGAACCATGTCGT10.5181347150259068No Hit
GCTATCCTGCCATGCTCCAGGCCATGCTCCAGGTTAGTGACAAGATGTCC10.5181347150259068No Hit
CTTCCTCTTCTCAGCTGCTGTTGTTTCCGTCCAACTGTAGAACCATGTCG10.5181347150259068No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACTTACGGGCTGC10.5181347150259068No Hit
AGACTCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC10.5181347150259068No Hit
AGACCCCTGGAACTGTTACATGTGCGGGCACAAGGGTACCTACGGGCTGC10.5181347150259068No Hit
TGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC10.5181347150259068No Hit
AGACCCCTGGAACTGCTACCTGTGCGGGCACAAGGGTATCTACGGGCTGC10.5181347150259068No Hit
AGACCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGCT10.5181347150259068No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCCGC10.5181347150259068No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGTCCAACTGTAGAACCCATGTCG10.5181347150259068No Hit
CTTCCTCTTCTCAGCTGTTGTCGTTTCCGTCCAACTGTAGAACCATGTCG10.5181347150259068No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCAGC10.5181347150259068No Hit
AGACCCTTGAAAATCAAACATTTCCGGCACCAAGGTAACCAACGGCATGA10.5181347150259068No Hit
AGACCCTGGAACTGCTACCTGTGCGGGCACAAGGGTACTTACGGGCTGCT10.5181347150259068No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)