FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008142720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008142720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158
Total Bases22.9 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC10868.35443037974683No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC1811.39240506329114No Hit
AGCACAGGACTCTTCTTTGTGTGGTTAGACGGTTTGAAGATGAGCCACTG42.5316455696202533No Hit
CGGAAACAACAACTGCTGGAGCATGGCAGGATAGCCTGTTCAGACCAAGT31.89873417721519No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGCT21.2658227848101267No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGCT21.2658227848101267No Hit
CGGAAACAACAACTGGAGCATGGCAGGATAGCCTGTTCAGACCAAGTCTC21.2658227848101267No Hit
CGGAAACAACAACGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGCT21.2658227848101267No Hit
CGTTAGTGACAAGAGGGACATCTGAGAAGAGGAAGCTGTTCAGACCAAGT10.6329113924050633No Hit
CGGAAACAACCAGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGCTA10.6329113924050633No Hit
CGGAAACAACAACTGCTGAGAAGAGGTAGCTGTTCAGACCAAGTCTCTGC10.6329113924050633No Hit
CGTTAGTGACAAGAGGGACATCTGAGAAGAGGAGCTGTTCAGACCAAGTC10.6329113924050633No Hit
ACAACAGGTCAGATGCAGGCCCAGCGGTGTCCCAAGCTCCCACCCAGCGC10.6329113924050633No Hit
ACAACAGGTCAGATGCAGGCCCAGCGGTGTCCCAAGCTCCCACCCAGAGC10.6329113924050633No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT10.6329113924050633No Hit
CGGAAACAACATCTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC10.6329113924050633No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGCT10.6329113924050633No Hit
CTGAAACAACAACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC10.6329113924050633No Hit
CGGAAGCAACAACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGA10.6329113924050633No Hit
CGGAAACAACAACTGCTGAGAAGAGAACTGTTCAGACCAAGTCTCTGCTA10.6329113924050633No Hit
AGCACAGGACTCTTCTTTGGTGTAGCAGTTCCAGGGGTCTCTGTTCAGAC10.6329113924050633No Hit
CGGAAACAACAACCGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC10.6329113924050633No Hit
CGGAAACAACTACAGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC10.6329113924050633No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCT10.6329113924050633No Hit
CGGAAACAACAACTGTTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC10.6329113924050633No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)