FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008142721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008142721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158
Total Bases22.9 kbp
Sequences flagged as poor quality0
Sequence length145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG10667.08860759493672No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG1811.39240506329114No Hit
TGGCTCATCTTCAAACCGTCTAACCACACAAAGAAGAGTCCTGTGCTTCC42.5316455696202533No Hit
GCTATCCTGCCATGCTCCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACC31.89873417721519No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCGT21.2658227848101267No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGTCCAACTGTAGAACCATGTCGT21.2658227848101267No Hit
GCTATCCTGCCATGCTCCAGTTGTTGTTTCCGTCCAACTGTAGAACCATG21.2658227848101267No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGTCCAACTGTAGAACCATGTCGT21.2658227848101267No Hit
AGACCCCTGGAACTGCTACATGTGCGGGCACAAGGGTACCTACGGGCTGC10.6329113924050633No Hit
CTTCCTCTTCTCAGCAGTTGTTGATTCCGACGAACTGTAGAACCATTTCG10.6329113924050633No Hit
TTCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCGTC10.6329113924050633No Hit
AGACCCCTGGAACTGCTACACCAAAGAAGAGTCCTGTGCTTCCAACTGTA10.6329113924050633No Hit
TGGCTCATCTTCAAACCGTCTCCTGTTTTGTAGTCCAACCCTGTGACGAT10.6329113924050633No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGTCCAACTGTAGAACCATGTCG10.6329113924050633No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGTCCAACTGTAGAACCATGTCGT10.6329113924050633No Hit
CTACCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG10.6329113924050633No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACAATGTCG10.6329113924050633No Hit
CTTCCTCTTCTCAGCAGATGTTGTTTCCGTCCAACTGTAGAACCATGTCG10.6329113924050633No Hit
CTTCCTCTTCTCAGCTGTAGTTGTTTCCGTCCAACTGTAGAACCATGTCG10.6329113924050633No Hit
CTCCTCTTCTCAGATGTCCCTCTTGTCACTAACGTCCAACTGTAGAACCA10.6329113924050633No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTAG10.6329113924050633No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATT10.6329113924050633No Hit
CTTCCTCTTCTCAGATGTCCCTCTTGTCACTAACGTCCAACTGTAGAACC10.6329113924050633No Hit
CTTCCTCTTCTCAGCGGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG10.6329113924050633No Hit
CTTCCTCTTCTCAGCTGGTTGTTTCCGTCCAACTGTAGAACCATGTCGTC10.6329113924050633No Hit
AGACCCTGGAACTGCTACATGTGCTGCCACAAGGGTACCTACGCGCTGCT10.6329113924050633No Hit
CTTCCTCTTCTCAACAGTTGTTGTTTCCGTCCAACTGTAGAACCATGTCG10.6329113924050633No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)