FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008142776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008142776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5997
Total Bases864.2 kbp
Sequences flagged as poor quality0
Sequence length141-145
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCT469678.3058195764549No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC2654.4188761047190255No Hit
CGTTAGTGACAAGAGGGACATCTCGCGATTTCTCGAGTCCAACCCTGTGA2624.368851092212773No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC861.4340503585125897No Hit
GCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT540.9004502251125562No Hit
AGCAAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT330.5502751375687844No Hit
AGCACAGGACTTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT300.5002501250625313No Hit
AGACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT290.4835751208937802No Hit
AGCACAGGATCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT250.41687510421877605No Hit
AGCACGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT190.3168250792062698No Hit
ACACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT180.3001500750375188No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGGGTACTTTTAAAGGTCCTGCT140.2334500583625146No Hit
AGCCAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT130.21677505419376353No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCCGCT110.18342504585626146No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTAAAAGGTCCTGCT90.1500750375187594No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCTGTTCAGACCAAGTCTCTGC90.1500750375187594No Hit
AGCACAGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT90.1500750375187594No Hit
AGCACAGGACTCTTCTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT90.1500750375187594No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACCTTTAAAGGTCCTGCT90.1500750375187594No Hit
AGCACAGGACTCTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT80.13340003335000833No Hit
AGCACAGGACTCTTTTTGGTATAAAGAGAGTACTTTTAAAGGTCCTGCTT80.13340003335000833No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGCCCTGCT60.10005002501250625No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTACTTTTAAAGGTCATGCT60.10005002501250625No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAGTGCTTTTAAAGGTCCTGCT60.10005002501250625No Hit
AGCACAGGACTCTTCTTTGGTATAAAGAGAATACTTTTAAAGGTCCTGCT60.10005002501250625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)