FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2182
Total Bases316.3 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG80036.663611365719525No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATT68531.393217231897342No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG1496.828597616865261No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG964.399633363886343No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT221.008249312557287No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT160.7332722273143905No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT140.6416131989000917No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT100.458295142071494No Hit
CTTCCTCTTTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC100.458295142071494No Hit
CTTCCTCTTCCCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATT100.458295142071494No Hit
CTCCTTCCAGGTGCTTTTGCTCCAAGGAGTGCCTGCTCATTTCAAACAGG80.36663611365719523No Hit
CTTCCTCTTCTCAGTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC80.36663611365719523No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT70.32080659945004586No Hit
CTTCCTCTTCTCGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC70.32080659945004586No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT70.32080659945004586No Hit
CTTCCTCTTCTAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC70.32080659945004586No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT70.32080659945004586No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGCCAAATT50.229147571035747No Hit
CTTCCTTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC50.229147571035747No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.229147571035747No Hit
CTTCCTCTTCTCAGCTGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC50.229147571035747No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.229147571035747No Hit
CTTCCTCTTCTCAGAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.229147571035747No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.229147571035747No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG40.18331805682859761No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGACG40.18331805682859761No Hit
CTTCCTCTTCTCAGCGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC40.18331805682859761No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT40.18331805682859761No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAGATT30.13748854262144822No Hit
CTTCCTCTTCTCAGCGGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.13748854262144822No Hit
CTTCCTCTTCTCACTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC30.13748854262144822No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAGCCTTTGGAGGGTCAAATT30.13748854262144822No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCC30.13748854262144822No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCGAATT30.13748854262144822No Hit
CTCCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.13748854262144822No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGGGATTGTGTAGAACCATGTCGT30.13748854262144822No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT30.13748854262144822No Hit
CTTCCTCTTCTCAGCTGGGACGGGTGGGTAAACCTTTGGAGGGTCAAATT30.13748854262144822No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC30.13748854262144822No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.13748854262144822No Hit
CTTCCTCTTCGCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT30.13748854262144822No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTGAACCTTTGGAGGGTCAAATT30.13748854262144822No Hit
CTTCCTCTTCTCAGCAATTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.13748854262144822No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATC30.13748854262144822No Hit
CTTCCTCTTCTCAGTAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.13748854262144822No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.13748854262144822No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGGGATTGTGTAGAACCATGTCG30.13748854262144822No Hit
TTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC30.13748854262144822No Hit
CTTCCTCTTCTCAGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATG30.13748854262144822No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)