FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2558
Total Bases370.8 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC60

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC102039.87490226739641No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT64425.175918686473807No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC1817.07584050039093No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC1285.003909304143862No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC1214.730258014073494No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT210.8209538702111024No Hit
ACAACAGGTCAGATGCAGGCGCTGCCCATGGGAGCCCTGCCCCAGGGGCC170.6645817044566067No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT140.547302580140735No Hit
GGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT110.4300234558248631No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT100.3909304143862392No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT90.3518373729476153No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT90.3518373729476153No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT90.3518373729476153No Hit
CGGAAACACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT70.2736512900703675No Hit
CGGAAACAACAACTGCTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTC70.2736512900703675No Hit
GGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT60.23455824863174357No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT60.23455824863174357No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC60.23455824863174357No Hit
CGGAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT60.23455824863174357No Hit
CGGAAACAACACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT50.1954652071931196No Hit
CGGAAACAACAACTGCTGCCACAGTGCTGTCCCTACATCTCACCCATCCC50.1954652071931196No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT50.1954652071931196No Hit
CGGAAACAACAACCGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC50.1954652071931196No Hit
CGGAAACAACAACTGCTGCGGGTGCTTTTGCGTGGAGTGTGTGGACCTCT40.1563721657544957No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGCGTGGACCTCT40.1563721657544957No Hit
GGAAACAACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT40.1563721657544957No Hit
CGGAAACAAAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT40.1563721657544957No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGACTCTGC40.1563721657544957No Hit
ACAACAGGTCAGATGCAGGCTTTGCTGCAAAAAGAACCGCTGATCAGAGC40.1563721657544957No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCAGC40.1563721657544957No Hit
CGGAAACAACACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT40.1563721657544957No Hit
ACAACAGGTCAAAAGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT30.11727912431587179No Hit
CGGAAACAACAACTGCTGAGAGAGGAAGGGAAGTAGACCAAGTCTCTGCT30.11727912431587179No Hit
CTGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC30.11727912431587179No Hit
CGGAAACAACAACGGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC30.11727912431587179No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGGCCTCT30.11727912431587179No Hit
CGGAAAAACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT30.11727912431587179No Hit
CGGAAAAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT30.11727912431587179No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGGGAAGTAGACCAAGTCTCTGCT30.11727912431587179No Hit
ACAACAGGCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGCT30.11727912431587179No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGGGAAGTAGACCAAGTCTCTGCT30.11727912431587179No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGGGAAGTAGACCAAGTCTCTGCT30.11727912431587179No Hit
CGGAAACAACAACTGTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT30.11727912431587179No Hit
CGGAAACAACAACTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTAC30.11727912431587179No Hit
CGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT30.11727912431587179No Hit
CGGAAACAACAACTGCTGAGAAGAAGAAGGGAAGTAGACCAAGTCTCTGC30.11727912431587179No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)