FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3766
Total Bases545.7 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATT129534.386617100371744No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG88723.552841210833776No Hit
CTCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCG41711.072756240042485No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG1694.487519915029209No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG902.389803505045141No Hit
CTCCTTCCAGGTGCTTTTGCTCCAAGGAGTGCCTGCTCATTTCAAACAGG832.203929899097185No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT401.0621348911311737No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT381.009028146574615No Hit
CTTCCTCTTCTAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC200.5310674455655868No Hit
CTTCCTCTTCCCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATT200.5310674455655868No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT170.4514073287307488No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT170.4514073287307488No Hit
CTTCCTTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC150.3983005841741901No Hit
CTTCCTCTTCTCAGTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC130.34519383961763145No Hit
TTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC130.34519383961763145No Hit
TCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCGG130.34519383961763145No Hit
CTTCCTCTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC110.2920870950610728No Hit
CTTCCTCTTTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC100.2655337227827934No Hit
CTTCCTCTTCTCACTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC100.2655337227827934No Hit
CTTCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC100.2655337227827934No Hit
CTTCCTCTTCTCGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC90.2389803505045141No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT90.2389803505045141No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGGGATTGTGTAGAACCATGTCGT90.2389803505045141No Hit
CCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCGG90.2389803505045141No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT80.21242697822623471No Hit
CTCCTTCCAGGTGCTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCGG80.21242697822623471No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT70.18587360594795538No Hit
CTCCTTCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCGG70.18587360594795538No Hit
CTTCCTCTTCTCAGCGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC70.18587360594795538No Hit
CTCCTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCGG60.15932023366967604No Hit
CTTCCTCTTCTCAGCTGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC60.15932023366967604No Hit
CTTCCTCTTCTCAGCTGGGACAGGCGGGTAAACCTTTGGAGGGTCAAATT50.1327668613913967No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.1327668613913967No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGCCAAATT50.1327668613913967No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG50.1327668613913967No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGGGGGTCAAATT50.1327668613913967No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.1327668613913967No Hit
CTTCCTCTTCTCAACAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG50.1327668613913967No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.1327668613913967No Hit
CTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAATTC50.1327668613913967No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAGCCTTTGGAGGGTCAAATT40.10621348911311736No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCGAATT40.10621348911311736No Hit
CTTCCTCTTCTCAGCTGAGACAGGTGGGTAAACCTTTGGAGGGTCAAATT40.10621348911311736No Hit
CTTCCTCTTCCCAGCTGAGACAGGTGGGTAAACCTTTGGAGGGTCAAATT40.10621348911311736No Hit
CTCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCGG40.10621348911311736No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC40.10621348911311736No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG40.10621348911311736No Hit
CTTCCTCTTCTCAGCTGGGACAGGTGGGTAAACCTTTGGAGGGTCAAACT40.10621348911311736No Hit
CTCCTTCCAGGTGCTTTTGCATCTGACCTGTTGTGGATTGTGTAGAACCA40.10621348911311736No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.10621348911311736No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)