FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1743
Total Bases252.7 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC131975.67412507171544No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC512.9259896729776247No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC452.5817555938037864No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT291.663798049340218No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT181.0327022375215147No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT150.8605851979345954No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT150.8605851979345954No Hit
GGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT150.8605851979345954No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGGGAAGTAGACCAAGTCTCTGCT140.8032128514056224No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT140.8032128514056224No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT110.6310958118187034No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT110.6310958118187034No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGAAGTAGACCAAGTCTCTGCT90.5163511187607573No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC70.4016064257028112No Hit
CGGAAACAACAATGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT60.34423407917383825No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT60.34423407917383825No Hit
CGGAAACAACAACGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT40.22948938611589212No Hit
CGGAAACAACAACTCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT40.22948938611589212No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCAGC40.22948938611589212No Hit
CGGAAACAACAACTGCTGAAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT40.22948938611589212No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACAAAGTCTCTGC40.22948938611589212No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGACTCTGC40.22948938611589212No Hit
CGGAAACAACAACTGCTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTC40.22948938611589212No Hit
CGGAAACAACAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTAC30.17211703958691912No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAAGGGAAGTAGACCAAGTCTCTG30.17211703958691912No Hit
CGGAAACAACAACTGTTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC30.17211703958691912No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGGGAAGTAGACCAAGTCTCTGCT30.17211703958691912No Hit
CGGAAACAACAACTGCTGGGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC30.17211703958691912No Hit
CGGAACACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTA30.17211703958691912No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTATGC30.17211703958691912No Hit
CGGAAACAAAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT20.11474469305794606No Hit
CGGAAACAACAACTGCTGAGAAGGGAAGGGAAGTAGACCAAGTCTCTGCT20.11474469305794606No Hit
CGGAAACAACAACTGCCGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.11474469305794606No Hit
CGGAAACAACAATTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.11474469305794606No Hit
CGGAAACAACACAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT20.11474469305794606No Hit
CGGAAAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTA20.11474469305794606No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGGGAAGTAGACCAAGTCTCTGCT20.11474469305794606No Hit
CGGAAACACAACAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT20.11474469305794606No Hit
CGGAAACACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT20.11474469305794606No Hit
CGGAAACAACAACTGCTGAGAAGAGGAATGGAAGTAGACCAAGTCTCTGC20.11474469305794606No Hit
CGGAAACAACAACAGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.11474469305794606No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.11474469305794606No Hit
CGGAAACAACAACTGCTGAGAAGAAGAAGGGAAGTAGACCAAGTCTCTGC20.11474469305794606No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)