FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1743
Total Bases252.7 kbp
Sequences flagged as poor quality0
Sequence length145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG129274.12507171543317No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG462.63912794033276No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG452.5817555938037864No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT281.6064257028112447No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT181.0327022375215147No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT160.9179575444635685No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT150.8605851979345954No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT150.8605851979345954No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT140.8032128514056224No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT140.8032128514056224No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT120.6884681583476765No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT110.6310958118187034No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT100.5737234652897304No Hit
CTCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCG80.45897877223178424No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC60.34423407917383825No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT60.34423407917383825No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGGGATTGTGTAGAACCATGTCGT60.34423407917383825No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGGGATTGTGTAGAACCATGTCG50.2868617326448652No Hit
CTTCCTCTTTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.22948938611589212No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCCATGTC40.22948938611589212No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.22948938611589212No Hit
CTTCCTCTTCTCAGAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.22948938611589212No Hit
CTTCCTCTTCTCAGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATG40.22948938611589212No Hit
CTTCCTCTTCTCAGCAGTTGTGTTCCGGGATTGTGTAGAACCATGTCGTC30.17211703958691912No Hit
CTTCCTCTTCTCAACAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.17211703958691912No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTAG30.17211703958691912No Hit
CTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.17211703958691912No Hit
CTTCCTCTTCTCAGCTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA30.17211703958691912No Hit
CTTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTC30.17211703958691912No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATTCGT20.11474469305794606No Hit
CTTCTTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit
CTTCCTCTTCTCAGCTGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT20.11474469305794606No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit
ATTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit
CTTCCTCTTCGCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT20.11474469305794606No Hit
CTTCCCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.11474469305794606No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCT20.11474469305794606No Hit
CTTCCTCTTCTCAGCAGTTGTTTTCCGGGATTGTGTAGAACCATGTCGTC20.11474469305794606No Hit
CTTCCTCTTCTCAGCATTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit
CTTCCTTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.11474469305794606No Hit
CTTCCTCTTCGCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.11474469305794606No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCC20.11474469305794606No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAAACATGTCG20.11474469305794606No Hit
CTTCCTCTTCTCAGTAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit
CTTCCTCTTCTCAGCTGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.11474469305794606No Hit
CTTCCTCTTCTCAGCAGTAGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.11474469305794606No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)