FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1352
Total Bases196 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG88465.38461538461539No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG946.952662721893491No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG574.215976331360947No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT392.8846153846153846No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT231.7011834319526626No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT161.183431952662722No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT90.6656804733727811No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT80.591715976331361No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT80.591715976331361No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCT70.5177514792899409No Hit
CTTCCTCTTCTCAGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATG70.5177514792899409No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT50.3698224852071006No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC50.3698224852071006No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.2958579881656805No Hit
CTCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCG40.2958579881656805No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.2958579881656805No Hit
CTCCTTCCAGGTGCTTTTGCGTTGATACCACTGCTTCCCATGTACTCTGC40.2958579881656805Clontech Universal Primer Mix Long (95% over 21bp)
TTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.2958579881656805No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGGGATTGTGTAGAACCATGTCGT40.2958579881656805No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.22189349112426035No Hit
CTCCTTCCAGGTGCTTTTGACCTGTTGTGGATTGTGTAGAACCATGTCGT30.22189349112426035No Hit
CTTCCTCTTCGCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT30.22189349112426035No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGGGATTGTGTAGAACCATGTCG30.22189349112426035No Hit
CTTCCTCTTCTCAGCTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA30.22189349112426035No Hit
CTTCCTCTTCTCAGCAGTAGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.22189349112426035No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT20.14792899408284024No Hit
CTTCCTCTTCTAAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTCCTTCCAGGTGCATCTGACCTGTGTGGATTGTGTAGAACCATGTCGTC20.14792899408284024No Hit
CTTCCTCTTTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.14792899408284024No Hit
CTTCCTCTTCTCAGCGGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTTCCTCTTCTCAGCAGTTGTCGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTTCCTCTTCTCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA20.14792899408284024No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.14792899408284024No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC20.14792899408284024No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCAAGTCG20.14792899408284024No Hit
CTTCCTCTTCTCAGCAGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA20.14792899408284024No Hit
CTTCCCCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTTCCTCTTCTCAGAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.14792899408284024No Hit
CATCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTTCCTCTTCTCAACAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit
CTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.14792899408284024No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT20.14792899408284024No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCTGGATTGTGTAGAACCATGTCG20.14792899408284024No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)