FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1751
Total Bases253.8 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG108061.679040548258136No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG1528.680753854940034No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG1035.88235294117647No Hit
CTCCTTCCAGGTGCTTTTGCTCCAAGGAGTGCCTGCTCATTTCAAACAGG382.1701884637350086No Hit
CTCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCG231.313535122786979No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT191.0850942318675043No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT160.9137635636778983No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT160.9137635636778983No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT130.7424328954882925No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT130.7424328954882925No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT100.5711022272986864No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT70.3997715591090805No Hit
CTTCCTCTTCTCAGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATG70.3997715591090805No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGGGATTGTGTAGAACCATGTCGT70.3997715591090805No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.2855511136493432No Hit
CTTCCTCTTCTCAGAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.2855511136493432No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT50.2855511136493432No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.2284408909194746No Hit
CTTCCTCTTCTCAGCGGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG40.2284408909194746No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC40.2284408909194746No Hit
CTTCCCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.2284408909194746No Hit
CTTCCTTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT40.2284408909194746No Hit
CTTCCTCTTCTCAGTAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG40.2284408909194746No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG40.2284408909194746No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT40.2284408909194746No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT30.17133066818960593No Hit
CTTCCTCTTCTCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA30.17133066818960593No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG30.17133066818960593No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.17133066818960593No Hit
CTTCCTCTTCGCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT30.17133066818960593No Hit
CTCCTTCCAGGTGCTTTTGCATCTGACCTGTTGTGGATTGTGTAGAACCA30.17133066818960593No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGGGATTGTGTAGAACCATGTCG30.17133066818960593No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT30.17133066818960593No Hit
CTACCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1142204454597373No Hit
CTTCCTTTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1142204454597373No Hit
CTCCTTCCAGGTGCTTTGCTCCAAGGAGTGCCTGCTCATTTCAAACAGGA20.1142204454597373No Hit
CTTCCTCTTCTCAGCTGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGCTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.1142204454597373No Hit
ATTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCAAGTCG20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTTC20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCC20.1142204454597373No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGAAGAACCATGTCG20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGATTGTGTAGAACCATGTCGTC20.1142204454597373No Hit
CTTCCTCTTCGCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.1142204454597373No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAATCATGTCG20.1142204454597373No Hit
CTTCCTCTTCTCAGCTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA20.1142204454597373No Hit
TTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.1142204454597373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)