FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1979
Total Bases286.9 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC143272.35977766548763No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC1045.255179383527034No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC703.5371399696816574No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT261.3137948458817585No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT261.3137948458817585No Hit
GGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT221.1116725618999495No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT150.7579585649317837No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT140.7074279939363315No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT140.7074279939363315No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT130.6568974229408793No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGAAGTAGACCAAGTCTCTGCT100.5053057099545225No Hit
CGGAAACAACAACTGCTGGGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC100.5053057099545225No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGGGAAGTAGACCAAGTCTCTGCT90.4547751389590703No Hit
CGGAAACAACAACTGTTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC90.4547751389590703No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT70.35371399696816574No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGACTCTGC70.35371399696816574No Hit
CGGAAACAACAATGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT60.30318342597271347No Hit
ACAACAGGTCAAAAGCACCTGGAAGGAGGGAAGTAGACCAAGTCTCTGCT60.30318342597271347No Hit
CGGAAACAACAACTGCTGAGAAGGGAAGGGAAGTAGACCAAGTCTCTGCT60.30318342597271347No Hit
CGGAAACAACAACTGCTGAAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT60.30318342597271347No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGGGAAGTAGACCAAGTCTCTGCT60.30318342597271347No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC50.25265285497726125No Hit
CGGAAACAACAACTGCTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTC50.25265285497726125No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCAGC40.202122283981809No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGGGAAGTAGACCAAGTCTCTGCT40.202122283981809No Hit
CGGAAACAACAACTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTAC40.202122283981809No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC40.202122283981809No Hit
CGGAAACAACAACTGCTGAGAGAGGAAGGGAAGTAGACCAAGTCTCTGCT30.15159171298635674No Hit
CTGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC30.15159171298635674No Hit
CGGAAACAACACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT30.15159171298635674No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT30.15159171298635674No Hit
CGGAAACACAACTGCTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT30.15159171298635674No Hit
CGGAAACAACAACTGCTGAAAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.1010611419909045No Hit
CGGAAACAACAACGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT20.1010611419909045No Hit
CGGAAACAACAACTGCCGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.1010611419909045No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGACACTGC20.1010611419909045No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGA20.1010611419909045No Hit
CGGAAACAACAACTGCTGGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCT20.1010611419909045No Hit
CGGAAAACAACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTA20.1010611419909045No Hit
CGGAAACAACAAGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTA20.1010611419909045No Hit
CGGAAACAACAACTGCGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTAC20.1010611419909045No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGGGGAAGTAGACCAAGTCTCTGC20.1010611419909045No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGGGAAGTAGACAAAGTCTCTGC20.1010611419909045No Hit
CGGAAACAACAACTGCTGACACTGACGACATGGTTCTACACAATCCCGGA20.1010611419909045No Hit
CGGAAACAACAACTGCTGAGAAGAGTAAGGGAAGTAGACCAAGTCTCTGC20.1010611419909045No Hit
CGGAAACAACAACTGCTGAGAATAGGAAGGGAAGTAGACCAAGTCTCTGC20.1010611419909045No Hit
CGGAAACAACAACCGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGC20.1010611419909045No Hit
CGAAACAACACTGCTGAGAAGAGGAAGGGAAGTAGACCAAGTCTCTGCTA20.1010611419909045No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)