FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008143873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008143873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1979
Total Bases286.9 kbp
Sequences flagged as poor quality0
Sequence length145
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG139170.28802425467407No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG1075.406771096513391No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG673.3855482566953006No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT271.3643254168772108No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGGGATTGTGTAGAACCATGTCGT251.263264274886306No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGATTGTGTAGAACCATGTCGT221.1116725618999495No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGGGATTGTGTAGAACCATGTCGT160.808489135927236No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTGGATTGTGTAGAACCATGTCGT140.7074279939363315No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGGGATTGTGTAGAACCATGTCGT130.6568974229408793No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT130.6568974229408793No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT100.5053057099545225No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG90.4547751389590703No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT80.404244567963618No Hit
CTTCCTCTTCTCAACAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG80.404244567963618No Hit
CTTCCTCTTTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT60.30318342597271347No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAAGAACCATGTC60.30318342597271347No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGGGATTGTGTAGAACCATGTCGT60.30318342597271347No Hit
CTCCTTCCAGGTGCTTTTGACCTGTTGTGGATTGTGTAGAACCATGTCGT60.30318342597271347No Hit
CTTCCCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT60.30318342597271347No Hit
CTTCCTTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT60.30318342597271347No Hit
CTTCCTCTTCTCAGCATTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT60.30318342597271347No Hit
CTTCCTCTTCTCAGCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATG50.25265285497726125No Hit
CTTCCTCTTCTCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA40.202122283981809No Hit
CTTCCTCTTCTCAGTAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG40.202122283981809No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGGGATTGTGTAGAACCATGTCG40.202122283981809No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGACG30.15159171298635674No Hit
CTTCCTCTTCTCAGCGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.15159171298635674No Hit
CTTCCTCTTCGCAGCAGTTGTGTTTCCGGGATTGTGTAGAACCATGTCGT30.15159171298635674No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.15159171298635674No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCT30.15159171298635674No Hit
CTCCTTCCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTTGGTGGGGCCG30.15159171298635674No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTAG30.15159171298635674No Hit
CTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.15159171298635674No Hit
CTTCCTCTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT30.15159171298635674No Hit
CTACCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit
CTTACTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATCTCG20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGACC20.1010611419909045No Hit
CTTCCTCTTCTCAGCGGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit
CTTCCTCTTCGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCGTCA20.1010611419909045No Hit
CTTCCTATTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTGGAACCATGTCG20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTTAGAACCATGTC20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCAAGTCG20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTTGTTTTCCGGGATTGTGTAGAACCATGTCGTC20.1010611419909045No Hit
CCTCCTCTTCTCAGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit
CTTCCTCTTCGCAGCAGTGTTGTTTCCGGGATTGTGTAGAACCATGTCGT20.1010611419909045No Hit
CTTCCTCTTCTCAGCAGTAGTTGTTTCCGGGATTGTGTAGAACCATGTCG20.1010611419909045No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)