FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008144256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008144256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1265
Total Bases183.4 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC97376.91699604743083No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC584.58498023715415No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC362.8458498023715415No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT141.1067193675889329No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT131.0276679841897234No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT120.9486166007905139No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT70.5533596837944664No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT70.5533596837944664No Hit
CGGAAACAACAACTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCTAC60.47430830039525695No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGCAAGGAAGACCAAGTCTCTGCT50.3952569169960474No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT50.3952569169960474No Hit
CGGAACCAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC40.31620553359683795No Hit
CGGAAACAACAACTGCTGGGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC40.31620553359683795No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGCAAGGAAGACCAAGTCTCTGCT40.31620553359683795No Hit
CGGAAACAACAACTGCTGAAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT40.31620553359683795No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAACAAGGAAGACCAAGTCTCTGC30.23715415019762848No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.23715415019762848No Hit
CGGAAACAACAACTGCTGAGAAGAGGAACAAGGAAGACCAAGTCTCTGCT30.23715415019762848No Hit
ACAACAGGTCAAAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT30.23715415019762848No Hit
CGGAAACAACAACTGCTGAGAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.23715415019762848No Hit
CGGAAACAACAACTGCCGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC30.23715415019762848No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGGCAAGGAAGACCAAGTCTCTGC20.15810276679841898No Hit
CGGAAACAACAACTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCTAC20.15810276679841898No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCAGC20.15810276679841898No Hit
ACAACAGGTCAGATGCAGGCAAAAGCACCTGGAAGGAGCAAGGAAGACCA20.15810276679841898No Hit
CGGAAACAACAACTGCTGAGAAGGAAGCAAGGAAGACCAAGTCTCTGCTA20.15810276679841898No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGACTCTGC20.15810276679841898No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT20.15810276679841898No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC20.15810276679841898No Hit
CGGAAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTG20.15810276679841898No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGA20.15810276679841898No Hit
CCGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTG20.15810276679841898No Hit
CTGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC20.15810276679841898No Hit
CGGAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCTACC20.15810276679841898No Hit
CGGAAACAACAACTGCTGAGAGGAGGAAGCAAGGAAGACCAAGTCTCTGC20.15810276679841898No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGCAAGGAAGACCAAGTCTCTGCT20.15810276679841898No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)