FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008144257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008144257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1265
Total Bases183.4 kbp
Sequences flagged as poor quality0
Sequence length145
%GC63

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG96976.600790513834No Hit
CTTCCTCTTCTCAGCTGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG564.426877470355731No Hit
CTTCCTCTTCGCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG362.8458498023715415No Hit
CTCCTTCCAGGTGCATCTGACCTGTTGTCGTACTTGTAGAACCATGTCGT131.0276679841897234No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTCCGCGTACTTGTAGAACCATGTCGT131.0276679841897234No Hit
CTCCTTCCAGGTGCTTCTGACCTGTTGTCGTACTTGTAGAACCATGTCGT120.9486166007905139No Hit
CTTCCTCTTCTCAGCAGTTGTGTTTCCGCGTACTTGTAGAACCATGTCGT70.5533596837944664No Hit
CTTCCTCTTCTCAGCAGTTGTTTTTCCGCGTACTTGTAGAACCATGTCGT70.5533596837944664No Hit
CTTCCTCTTCTCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGTCA60.47430830039525695No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCGCGTACTTGTAGAACCATGTCGT50.3952569169960474No Hit
CTTCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT50.3952569169960474No Hit
CTTCCTTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT50.3952569169960474No Hit
CTTCCTCTTCTCAGCAGTTGTTGGTTCCGCGTACTTGTAGAACCATGTCG40.31620553359683795No Hit
CTTCCTCTTCCCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG40.31620553359683795No Hit
CTTCCTCTTTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT40.31620553359683795No Hit
TTTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG30.23715415019762848No Hit
CTTCCTCTTCTCGGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG30.23715415019762848No Hit
CTTCCTCTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT30.23715415019762848No Hit
TTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT30.23715415019762848No Hit
CTCCTTCCAGGTGCTTTTGACCTGTTGTCGTACTTGTAGAACCATGTCGT30.23715415019762848No Hit
CTTCCTCTTCTCAGCAGTTTTGTTTCCGCGTACTTGTAGAACCATGTCGT30.23715415019762848No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTAG20.15810276679841898No Hit
CTTCCTCTTCTCAGCAGTTGGTGTTTCCGCGTACTTGTAGAACCATGTCG20.15810276679841898No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGACG20.15810276679841898No Hit
CTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT20.15810276679841898No Hit
CTTCCTCTTCGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGTCA20.15810276679841898No Hit
CTTCCTCTTCTCAGTAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG20.15810276679841898No Hit
CTTCCTCTTCTCAGCAGTGTTGTTTCCGCGTACTTGTAGAACCATGTCGT20.15810276679841898No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCCGGCGTACTTGTAGAACCATGTC20.15810276679841898No Hit
CCTCCTCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG20.15810276679841898No Hit
CTTCCTCTTCTCAGCTGTTGTTCCGCGTACTTGTAGAACCATGTCGTCAG20.15810276679841898No Hit
CTCCTTCCAGGTGCTTTTGCCTGCATCTGACCTGTTGTCGTACTTGTAGA20.15810276679841898No Hit
CTTCCTCCTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCG20.15810276679841898No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTTCCGCGTACTTGTAGAACCATGTC20.15810276679841898No Hit
CTTCCTCTTCTCAGCAGTTGTTGTTTCAGCGTACTTGTAGAACCATGTCG20.15810276679841898No Hit
CTTCCTTCTCAGCAGTTGTTGTTTCCGCGTACTTGTAGAACCATGTCGTC20.15810276679841898No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)