FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008144336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008144336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2277
Total Bases330.1 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC100143.96135265700483No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT71431.357048748353094No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC1084.743083003952568No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC823.60122968818621No Hit
ACAACAGGTCAGATGCAGGCGCTGCCCATGGGAGCCCTGCCCCAGGGGCC301.3175230566534915No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT150.6587615283267457No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT150.6587615283267457No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT130.5709266578831796No Hit
CGGAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT120.5270092226613966No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT110.4830917874396135No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT110.4830917874396135No Hit
CGGAAAAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT80.3513394817742644No Hit
CGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT70.30742204655248134No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT60.2635046113306983No Hit
CGGAAACACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT60.2635046113306983No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGCAAGGAAGACCAAGTCTCTGCT40.1756697408871322No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT40.1756697408871322No Hit
GGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT40.1756697408871322No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGCGTGTGGACCTCT40.1756697408871322No Hit
CGGAAACAACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCT40.1756697408871322No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC40.1756697408871322No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGCAAGGAAGACCAAGTCTCTGCT40.1756697408871322No Hit
CGGAAACAACAACGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.13175230566534915No Hit
CGGAAACAACAACTGCGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT30.13175230566534915No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGACTCTGC30.13175230566534915No Hit
CGGAAACAACAACTGCTGAGAAGAGGAACAAGGAAGACCAAGTCTCTGCT30.13175230566534915No Hit
CGGAAACAACAACTGCTGCGGGTGCTTTTGCGTGGAGTGTGTGGACCTCT30.13175230566534915No Hit
ACAACAGGTCAAAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT30.13175230566534915No Hit
CGGAAACAACAACAGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT30.13175230566534915No Hit
CGGAACCAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC30.13175230566534915No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCAGC30.13175230566534915No Hit
CGGAAACAACAATGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.13175230566534915No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGCAAGGAAGACCAAGTCTCTGCT30.13175230566534915No Hit
CGGAAACAACAACTGCCGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC30.13175230566534915No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)