FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008144430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008144430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1771
Total Bases256.7 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC99256.01355166572558No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT28315.979672501411631No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC1005.646527385657821No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC895.02540937323546No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC281.5810276679841897No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT181.0163749294184077No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT170.9599096555618294No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT170.9599096555618294No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT110.6211180124223602No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGCAAGGAAGACCAAGTCTCTGCT70.3952569169960474No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGCAAGGAAGACCAAGTCTCTGCT50.282326369282891No Hit
CGGAAACAACAACTGCTGAGAAGAGGAACAAGGAAGACCAAGTCTCTGCT40.2258610954263128No Hit
CGGAAACAACACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT40.2258610954263128No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT40.2258610954263128No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT40.2258610954263128No Hit
CGAAACAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT40.2258610954263128No Hit
CGGAAACAACAACTGCTGAGAAAGGAAGCAAGGAAGACCAAGTCTCTGCT30.16939582156973462No Hit
CGGAAACAACAACTGCTGCAAGAGGGGCCGTTTGTTCGACTCGCTAGTCT30.16939582156973462No Hit
CGGAAACAAAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.16939582156973462No Hit
ACAACAGGTCAGATGCAGGCGCTGCCCATGGGAGCCCTGCCCCAGGGGCC30.16939582156973462No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGACTCTGC30.16939582156973462No Hit
CGGAAAAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT30.16939582156973462No Hit
CGGAACAACAACTGCTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.16939582156973462No Hit
CGGAACCAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC30.16939582156973462No Hit
CGGAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT30.16939582156973462No Hit
GGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT30.16939582156973462No Hit
CGGAAACAACAACTGCTGAGAAGAGGAGGCAAGGAAGACCAAGTCTCTGC20.1129305477131564No Hit
CGGAAACAACAACTGCTGCGGGTGCTTTTGCGTGGAGTGTGTGGACCTCT20.1129305477131564No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC20.1129305477131564No Hit
CGGAAACAACAACCGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC20.1129305477131564No Hit
CGGAAACAACAACAGCTGGGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC20.1129305477131564No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCACTGC20.1129305477131564No Hit
CGGAAACAACAACTGCTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTC20.1129305477131564No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAACTCTCTGC20.1129305477131564No Hit
ACACAGGTCAGAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCTA20.1129305477131564No Hit
CGGAAACAACAATTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC20.1129305477131564No Hit
CGGAAACACAACTGCTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT20.1129305477131564No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCAGC20.1129305477131564No Hit
CGGAAACACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT20.1129305477131564No Hit
CGGAAACAACAACTGCTGCGAAGAGAAGCAAGGAAGACCAAGTCTCTGCT20.1129305477131564No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)