FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008144502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008144502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5567
Total Bases807.1 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC61

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT312056.04454823064488No Hit
CGGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC124122.292078318663552No Hit
CGGAAACAACAACTGCTGCGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC1833.2872283096820545No Hit
CGGAAACAACAACAGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC1332.3890784982935154No Hit
CGGAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT661.1855577510328723No Hit
ACAACAGGTCAGATGCAGGCCCATCGGTGTCCCAAGCTCCCACCCAGCGC651.1675947548051016No Hit
ACAACAGGTCAGATGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT290.5209268906053529No Hit
CGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT280.5029638943775822No Hit
CGGAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT270.4850008981498114No Hit
CGGAAAAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT260.46703790192204064No Hit
CGGAAACACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT250.44907490569426983No Hit
ACAACAGGTCAGAAGCACCTGGAAGGAGCAAGGAAGACCAAGTCTCTGCT200.35925992455541583No Hit
ACAACAGGTCAGATGCAGGCGCTGCCCATGGGAGCCCTGCCCCAGGGGCC200.35925992455541583No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGGCCTCT140.2514819471887911No Hit
GGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT140.2514819471887911No Hit
CGGAAAAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT130.23351895096102032No Hit
CGGAAACAACACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT130.23351895096102032No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGCGGAGTGTGTGGACCTCT120.21555595473324948No Hit
CGGAAACAACAACTGCTGCAGGTGCCTTTGCGTGGAGTGTGTGGACCTCT110.1975929585054787No Hit
CGGAACCAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT100.17962996227770792No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGCGGACCTCT100.17962996227770792No Hit
CGGAAACAACAACTGCTGCATCCTTAGGAAGGATCAGAAACCATGCTGCC90.16166696604993713No Hit
CGAAACAACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT80.14370396982216635No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCATGGAGTGTGTGGACCTCT80.14370396982216635No Hit
CGGAAACAACAACTGCTGCGGGTGCTTTTGCGTGGAGTGTGTGGACCTCT70.12574097359439554No Hit
CGGAAACAAAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCTT70.12574097359439554No Hit
CGGAAACAACAACAGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCTCT70.12574097359439554No Hit
CGGAAACACAACTGCTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGCT60.10777797736662474No Hit
CGGAAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGCGTGTGGACCTCT60.10777797736662474No Hit
CGGAAACAACAACTGCTGAGAAGAGAAGCAAGGAAGACCAAGTCTCTGCT60.10777797736662474No Hit
CGGAAACAACAACTGTTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC60.10777797736662474No Hit
CGGAAACAACAACTACTGAGAAGAGGAAGCAAGGAAGACCAAGTCTCTGC60.10777797736662474No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)