FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008145198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008145198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2502
Total Bases362.4 kbp
Sequences flagged as poor quality0
Sequence length142-145
%GC55

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACTTGAATCAACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAAG57923.14148681055156No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCT42216.866506794564348No Hit
CGCCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATAT39315.707434052757794No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCT30512.190247801758593No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGGGTGGGGGGTGTTT2078.273381294964029No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGAGAACTTGCGCCTG1596.3549160671462825No Hit
AGCAACAATGATCAGCAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAA190.759392486011191No Hit
AGCACTTGAATAACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAAGA120.4796163069544364No Hit
GCAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGCAGCGGCTAAAGAC120.4796163069544364No Hit
GCAAAAGTTCTAGGGATGTCCTATTGCTAAGTGGGGGTGGGGGGTGTTTG110.4396482813749001No Hit
GCAAAGTTCTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCTG100.3996802557953637No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTTCCCATGTACTCTGCGT90.3597122302158274No Hit
GCAAAAGTTCTAGGGATGTCCTATTGCTAAGTGGGAGAACTTGCGCCTGT80.31974420463629094No Hit
GAAAAGTTCTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCTG60.2398081534772182No Hit
AGCACTTGAATCAACAGGCTAAAGACCAAGTCTCTGCTACCGAAGATAAG60.2398081534772182No Hit
CGCCAGGCAGGAATCATTCACACTGACGACATGGTTCTACAGTCCAAGCA60.2398081534772182No Hit
GCAAAAGTTTCAGGGATGTCCTATTGCTAAGTGGGGGTGGGGGGTGTTTG60.2398081534772182No Hit
GCAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGGGTGGGGGGTGTTTG50.19984012789768185No Hit
CGCCAGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT50.19984012789768185No Hit
AGCACTTGAATCACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAAGA50.19984012789768185No Hit
GCAAAGTTCTCAGAGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCTG50.19984012789768185No Hit
GCAAAAGTTCTCAGGGATGTTAGAGATGTGTAAGCGCAGCGGCTAAAGAC50.19984012789768185No Hit
CGCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT50.19984012789768185No Hit
AAGCACTTGAATCAACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAA40.15987210231814547No Hit
GCAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGAGAACTTGCGCCTGT40.15987210231814547No Hit
GCAGCTTAGCAGAGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCTGC40.15987210231814547No Hit
GCAAAAGTTCTCAGGGATGTCGCGGTGAGTTCAGGCTTTTTCATGGTTTA40.15987210231814547No Hit
GAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGAGAACTTGCGCCTGT40.15987210231814547No Hit
GCAAAAGTTCTCAGGGATGTGTAAACGCAGCGGCTAAAGACCAAGTCTCT40.15987210231814547No Hit
GCAAAAGTTCTCAGAGATGTCCTATTGCTAAGTGGGGGTGGGGGGTGTTT40.15987210231814547No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCA40.15987210231814547No Hit
GCAAAAGTTCTCAGGATGTCCTATTGCTAAGTGGGAGAACTTGCGCCTGT30.1199040767386091No Hit
AGCACTTGAATAAACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAAG30.1199040767386091No Hit
GCAAAAGTCTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCTG30.1199040767386091No Hit
GCAAAAGTTTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCTG30.1199040767386091No Hit
GCAAAAGTTCTCGGGATGTCCTATTGCTAAGTGGGGGTGGGGGGTGTTTG30.1199040767386091No Hit
AGCACTTGAATCAACAGGCTAAAGACAAAGTCTCTGCTACCGTAGATAAG30.1199040767386091No Hit
GCAAAAGTTCTCAGGGATGTCTCGTGGGCTCAGAGATGTGTAAGCGCAGC30.1199040767386091No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAACGGCTAAAGACCAAGTCTCT30.1199040767386091No Hit
AGCACTTGATCAACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAAGA30.1199040767386091No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCGGCTAAAGACAAAGTCTCT30.1199040767386091No Hit
AGCACTGAATCAACAGGCTAAAGACCAAGTCTCTGCTACCGTAGATAAGA30.1199040767386091No Hit
GCAAAAGTTTTCAGGGATGTGTAAGCGCAGCGGCTAAAGACCAAGTCTCT30.1199040767386091No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGAGAACTAGCGCCTG30.1199040767386091No Hit
CGCCAGGCAGGAATCACACTGACGACATGGTTCTACAGTCCAAGCAAAAG30.1199040767386091No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)