FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008145772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008145772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34248
Total Bases4.9 Mbp
Sequences flagged as poor quality0
Sequence length141-145
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATAT1196734.94218640504555No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC837224.445223078719923No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA696320.331114225648214No Hit
AACTCCTGTTTAGGCCTTGCAGAATTTGGGACTCTGCCATATTCTTTCCG10913.18558747956085No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTC5251.5329362298528382No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT4711.3752627890679747No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT3451.0073580939032938No Hit
CGCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT1720.5022191076851203No Hit
GGTGTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG740.21607101144592386No Hit
GGTGTTTGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG740.21607101144592386No Hit
CGCCAGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT720.21023125437981782No Hit
CGCCAGGAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT660.19271198318149965No Hit
GTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG650.18979210464844665No Hit
GCAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGCAGCTCACAGAGAC630.18395234758234055No Hit
GCCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT620.18103246904928755No Hit
CGCCGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT600.17519271198318148No Hit
CGCCAGGCAGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT520.1518336837187573No Hit
AACTCCTGTTTAGGCTTTGCGGCCACTGATAGGATCACAGAGACCAAGTC440.1284746554543331No Hit
GCAAAAGTTCTCAGGGATGTTAGCAACTCTGCGTTGATACCACCCCATGT440.1284746554543331No Hit
AGCACTTGAATAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACACC420.12263489838822705No Hit
CCCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT400.116795141322121No Hit
AGACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACACC390.11387526278906798No Hit
AGCACTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACACC380.11095538425601496No Hit
CGCCAGGCGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT380.11095538425601496No Hit
CGCCAGGCAGGAATATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATT370.10803550572296193No Hit
GGTGTTTGGGATGGATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG350.10219574865685586No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)