FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008146176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008146176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences914
Total Bases132.5 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC60

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT24126.367614879649892No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTC22424.50765864332604No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT21223.194748358862142No Hit
AACTCCTGTTTAGGCTTTGCGGCCACTGATAGGATCACAGAGACCAAGTC111.2035010940919038No Hit
GCAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGCAGCTCACAGAGAC101.0940919037199124No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTTCCCATGTACTCTGCGT70.7658643326039387No Hit
GCAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG60.6564551422319475No Hit
AACTCCTGTTTAGGCCACTGATAGGATCACAGAGACCAAGTCTCTGCTAC60.6564551422319475No Hit
GCAAAAGTTCTCAGGGATGTCGCGGTGAGTTCAGGCTTTTTCATGGTTTA60.6564551422319475No Hit
GCAAAAGTTCTCAGGGATGTCCGAGATGTGTAAGCGCAGCTCACAGAGAC60.6564551422319475No Hit
GCAAAATTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG50.5470459518599562No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACAAAGTCTCT50.5470459518599562No Hit
AACTCCTGTTTAGGCCTTGCGCCACTGATAGGATCACAGAGACCAAGTCT50.5470459518599562No Hit
AACTCCTGTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT50.5470459518599562No Hit
GCAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG40.437636761487965No Hit
AACTCCTGTTTAGGCCTCTCTCCTCATTCTAAACAACTCACAGAGACCAA40.437636761487965No Hit
GAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG30.3282275711159737No Hit
GCAAAAGTTCTCAGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG30.3282275711159737No Hit
AACCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT30.3282275711159737No Hit
CGCCAGGCAGGAATCATTCACACTGACGACATGGTTCTACAACATGGGCA30.3282275711159737No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTATAGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
GCAAAAGTTCTCAGGGATGTCACACTGACGACATGGTTCTACAACATGGG20.2188183807439825No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTTCCGCCATCCCCGACCT20.2188183807439825No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGTAGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
ACTCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
CAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG20.2188183807439825No Hit
GCAAAAGTTTTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT20.2188183807439825No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCA20.2188183807439825Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCAAAAGTTCTCAGAGATGTGTAACGCAGCTCACAGAGACCAAGTCTCTG20.2188183807439825No Hit
GAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG20.2188183807439825No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGATGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
AACTCCTGTTTGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
AACTCCTGTTTAGGCCTTGCGGCCACGATAGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
AACTCCTGTTTAGGCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT20.2188183807439825No Hit
GCAAAAGTTCTCAGGGATGAAGAGATGTGTAAGCGCAGCTCACAGAGACC20.2188183807439825No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCACTCACAGAGACCAAGTCTCTG20.2188183807439825No Hit
GCAAAAGTTCTAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG20.2188183807439825No Hit
GCAAAAGTTCTCAGGGATGCGTAAGCGCAGCTCACAGAGACCAAGTCTCT20.2188183807439825No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACAAAGTC20.2188183807439825No Hit
CGCCAGGCAGGAATCATTCACTGACGACATGGTTCTACAACATGGCGCCA10.10940919037199125No Hit
GAAAAGTTCTCAGGGATGTCCACTGACGACATGGTTCTACAACATGGGCA10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACACAGACCAAGAC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGGTGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCAGATGTGTAAGCGCAGCTCACAGAGACCA10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGCGGCCACCGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit
AGCACTTGAATCAACAATGATCAGCATCACAGAGACCAAGTCTCTGCTAC10.10940919037199125No Hit
GCAAAAGTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGATCTCAGGGATGTGTAAGCGCAGCTCACAGAGACAAAGTCTCT10.10940919037199125No Hit
AGCACTTGAATCAACAGTGATCAGCATCACAGAGACCAAGTCTCTGCTAC10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCACAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
CGCCAGGCAGGAATCATTCACACTGACGACATGGGTTCTACAACATGCGC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCCGTGGGCTCAGAGATGTGTAAGCGCAGCT10.10940919037199125No Hit
GCAAAAGTCTCAGGGATGTCAGAGATGTGTAAGCGCAGCTCACAGAGACC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCA10.10940919037199125No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGGTCTCGTGGGCTCGGAGAT10.10940919037199125Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCTAAAGTTTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GAAAAGTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTGC10.10940919037199125No Hit
GCAAAAGTTTCAGGGATGTCGGCAAAAGTTATCAGAGATGTGTAAGCGCA10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGCGGCTCACAGAGAC10.10940919037199125No Hit
GAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGCAGCTCACAGAGACC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGAAGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGAGGCCACTGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCACA10.10940919037199125No Hit
ACAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACAAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAACTCTCA10.10940919037199125No Hit
CGCCAGGCAGGAATCATTAACACTGACGACATGGTTCTACAACATGGGCA10.10940919037199125No Hit
AGCACTTGAATCAACAGGCTTCAGAGACTGAGCCATTTTCAAACTCACAC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCACAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
CGCCAGGCGGAATCATTCACACTGACGACATGGTTCTACAACATGGGCAA10.10940919037199125No Hit
GCAAAAGTTCTCGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTTTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
CGCCAGCCAGGAATCATTCACACTGACGACATGGTTCTACAACATGGGCA10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCTGAGTAGATGTGTAAGCGCAGCTCACAGA10.10940919037199125No Hit
AACTCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT10.10940919037199125No Hit
AGCACTTGAATCAACAGGCCACTGATAGGATCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCCCTGACGACATGGTTCTACAACATGGGCA10.10940919037199125No Hit
GCAAAAGTTCTAAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
ACTCCTGTTTAGGCCTTGCGCCACTGATAGGATCACAGAGACCAAGTCTC10.10940919037199125No Hit
GGGCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTGCTACC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCACCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
CAAAAGTTTCAGGGATGTGTAAGCGCAGCTCCCAGAGACCAATTCTCTGC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTACTCTGCGTTGATACCACTGCTTCCCATGT10.10940919037199125Clontech Universal Primer Mix Long (96% over 26bp)
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCACACAGAGACCAACTCTCA10.10940919037199125No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGGAAGTGGTATCAACGCAGA10.10940919037199125Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACATAGACCAAGTCTCT10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTTAGGATCACAGAGACCAAGTCTC10.10940919037199125No Hit
AACCCTGTTTAGGCTTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCCCGAGGGCTCAGAGATGTGTAAGCGCAGC10.10940919037199125No Hit
GCAAAAGCTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCCGTTGATACCACTGCCCCATGAACTCTGC10.10940919037199125No Hit
GCAAAAGATCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACAAAGTCTCT10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGCGGCCATGATAGGATCACAGAGACCAAGTCT10.10940919037199125No Hit
GGTGTTTGGGATGGAATGGTGACACTGACGACATGGTTCTACAGCCCAAA10.10940919037199125No Hit
GCAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGCCCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGGGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGAAAGCGCAGCTCACAGAGACCAAGTCTCA10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAACTCTCT10.10940919037199125No Hit
AACTCCTGTTTAGGCTTTGCGGCACTGATAGGATCACAGAGACCAAGTCT10.10940919037199125No Hit
GCAAAAGTTATCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTTCGGCCACTGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit
CGCCAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC10.10940919037199125Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AACTCCTGTTTAGGCCTTGCACACTGACGACATGGTTCTACAGCCCAAAG10.10940919037199125No Hit
AGCACTTGAATCAACAGGCTAAAGACCAACTTTGCGGCCACTGATAGGAT10.10940919037199125No Hit
ATCTCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGTGGCCACTGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit
GCAAAAGTTCTCAGTGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTAGGGATGTCACTGACGACATGGTTCTACAACATGGGCAA10.10940919037199125No Hit
CAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATATGTAAGCGCACTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAACGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
ATCCTGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCTC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGACTCT10.10940919037199125No Hit
CAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTGC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGCAGGTCACAGAGAC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTTAGAGATGTGTAAGCGCAGCTCACAGAGAC10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAACTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATATCGCGGTGAGTTCAGGCTTTTTCATGGTTTA10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCGATGAGGTCATCCCCAAGCAGCTTAGAAG10.10940919037199125No Hit
GCAAAAGTTTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
AACTCCTGTTTAGGCCTTGCGGGCCACTGATAGGATCACAGAGACCAAGT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGCAAAAGTTCTCAGAGATGTGTAAGCGCAG10.10940919037199125No Hit
AATCCTGTTTAGGTCTTGCGGCCACTGATAGGATCACAGAGACCAAGTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCGGGAGCCTGCACAGCTTAGCAGAGATGTG10.10940919037199125No Hit
AACTCCGTTTAGGCCTTTCTCCTCATTCTAAACAACTCACAGAGACCAAG10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTTCCCATGTACTCTGCGTT10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGGTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTTCAGAGATGTGTAAGCGCAGCTCACAGACACAAAGTCTCTG10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCCCTGACGACAGGGTTCTACAACATGGGCA10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATTTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCA10.10940919037199125No Hit
GCAAAACTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGTTCTCAGGGATGTCAGAGATGTGTAAGCGTAGCTCACAGAGAC10.10940919037199125No Hit
GCAAAATTTATCAGAGATGTTTAATCTCAGATCACAGATACAAATTAACT10.10940919037199125No Hit
AACTCCTGTTTAGGCTTTGCAGCCACTGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit
AGCACTTGAATCAACAGGCTACACTGACGACATGGTTCTACAGCCCAAAG10.10940919037199125No Hit
CGCCAGGCAGGAATCATTCACACTAACGACATGGTTCTACAACATGGGCA10.10940919037199125No Hit
GGAAAAGTTCTCAGGGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTCT10.10940919037199125No Hit
GCAAAAGGTTCTCAGAGATGTGTAAGCGCAGCTCACAGAGACCAAGTCTC10.10940919037199125No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCGCTCACAGAGACCAAGTCTCTG10.10940919037199125No Hit
AACTCCAGTTTAGGCCTTGCGGCCACTGATAGGATCACAGAGACCAAGTC10.10940919037199125No Hit

[FAIL]Adapter Content

Adapter graph