FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008146560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008146560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1611
Total Bases233.5 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCT65640.72004965859715No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCT57735.81626319056487No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTGATAGGACTGCATAGACCAAGTC1096.765983860955928No Hit
GCAAAGTTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG181.1173184357541899No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACAAAGTCTCT80.4965859714463066No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACAAAGTCTCT80.4965859714463066No Hit
GAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG80.4965859714463066No Hit
AACTCCTGTTTAGGCCACTGATAGGACTGCATAGACCAAGTCTCTGCTAC70.4345127250155183No Hit
GCAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG70.4345127250155183No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCACCTGCATAGACCAAGTCTCTG60.37243947858473No Hit
AACTCCTGTTTAGGCCTCTCTCCTCATTCTAAACAACCTGCATAGACCAA60.37243947858473No Hit
AACTCCTGTTTAGGCTTTGCGGCCACTGATAGGACTGCATAGACCAAGTC50.31036623215394166No Hit
GCAAAAGTTCTCAGAGATGTGTAACGCAGCCTGCATAGACCAAGTCTCTG40.2482929857231533No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCACCTGCATAGACCAAGTCTCTG40.2482929857231533No Hit
GCAAAAGTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG40.2482929857231533No Hit
GCAAAAGTTCCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG40.2482929857231533No Hit
GCAAAAGTTCTCAGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG30.186219739292365No Hit
GCAAAAGTTTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG30.186219739292365No Hit
GCAAAAGTTCTAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG30.186219739292365No Hit
GCAAAAGTTCTCAGGGATGTTAGAGATGTGTAAGCGCAGCCTGCATAGAC30.186219739292365No Hit
GCAAAAGTTCTCAGGGATGTCGATGAGGGAAGAGATGTGTAAGCGCAGCC30.186219739292365No Hit
GCAAAAGTTCTCAGGGAAGTGTAAGCGCAGCCTGCATAGACCAAGTCTCT30.186219739292365No Hit
GCAAAAGTTCTCAGGGATGTGTAACGCAGCCTGCATAGACCAAGTCTCTG30.186219739292365No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCCAGCCTGCATAGACCAAGTCTCTG30.186219739292365No Hit
GAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTGC20.12414649286157665No Hit
AACTCCTGTTTAGGCCTTGCGCCACTGATAGGACTGCATAGACCAAGTCT20.12414649286157665No Hit
GCAAAAGTTCTCAGAGATGTGTAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
ACAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCT20.12414649286157665No Hit
GCAAAAGTTTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCACT20.12414649286157665No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGACTCT20.12414649286157665No Hit
AACTCCTGTTAGGCCTTGCGGCCACTGATAGGACTGCATAGACCAAGTCT20.12414649286157665No Hit
GAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
GCAAAAGTTCTAAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCT20.12414649286157665No Hit
AACTCCTGTTTAGGCCTTGCGGCCACTATAGGACTGCATAGACCAAGTCT20.12414649286157665No Hit
GGCAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTC20.12414649286157665No Hit
GCAAAAGTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
GCAAAAGTTCTCAGGGATGTGTAGGCGCAGCCTGCATAGACCAAGTCTCT20.12414649286157665No Hit
GCAAAAGTTCTCAGGAATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCT20.12414649286157665No Hit
GCAAAAGATCTCAGGGATGTGTAAGCGCAGCCTGCATAGACAAAGTCTCT20.12414649286157665No Hit
GCAAAAGTTCTCAGGGATGTGTAAGCGCAGCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
AACTCTGTTTAGGCCTTGCGGCCACTGATAGGACTGCATAGACCAAGTCT20.12414649286157665No Hit
GCAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCA20.12414649286157665No Hit
GCAAAAGTTCTCAGAGATGTTAAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
GCAAAAGTTCTCAGGGATGCGTAAGCGCAGCCTGCATAGACCAAGTCTCT20.12414649286157665No Hit
CAAAAGTTCTCAGAGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit
CAAAAGTTCTCAGGGATGTGTAAGCGCAGCCTGCATAGACCAAGTCTCTG20.12414649286157665No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)