FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008146561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008146561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1611
Total Bases233.5 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC63

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGCTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGT66040.9683426443203No Hit
GCTGCGCTTACACATCTCTGAGAACTTTTGCGAATCCTGTAGAACCATGT59036.623215394165115No Hit
TCCTATCAGTGGCCGCAAGGCCTAAACAGGAGTTGAATCCTGTAGAACCA1126.952203600248293No Hit
GCTGCGCTTACACATCCCTGAGAACTTTGCGAATCCTGTAGAACCATGTC171.0552451893234016No Hit
GCTGCGCTTACACATCCCTGAGAACTTTTCGAATCCTGTAGAACCATGTC80.4965859714463066No Hit
TCCTATCAGTGGCCTAAACAGGAGTTGAATCCTGTAGAACCATGTCGTCA60.37243947858473No Hit
GCTGCGCTTACACATCTCTGAGAACTTTGCGAATCCTGTAGAACCATGTC60.37243947858473No Hit
GTTGTTTAGAATGAGGAGAGAGGCCTAAACAGGAGTTGAATCCTGTAGAA60.37243947858473No Hit
GTGCGCTTACACATCTCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC60.37243947858473No Hit
TCCTATCAGTGGCCGCAAAGCCTAAACAGGAGTTGAATCCTGTAGAACCA50.31036623215394166No Hit
GCTGCGTTACACATCTCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC40.2482929857231533No Hit
GCTGCGCTTACACATCCCTGAGACTTTTGCGAATCCTGTAGAACCATGTC40.2482929857231533No Hit
GCTGCGCTTACACATCCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC40.2482929857231533No Hit
GCTGCGCTTACACATCCCTGGAACTTTTGCGAATCCTGTAGAACCATGTC40.2482929857231533No Hit
GCTGCGCTTACACATCGCTGAGAACTTTTGCGAATCCTGTAGAACCATGT40.2482929857231533No Hit
GTGCGCTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC40.2482929857231533No Hit
GCTGCGCTTACACATCTCTGAAACTTTTGCGAATCCTGTAGAACCATGTC30.186219739292365No Hit
GCTGCGTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC30.186219739292365No Hit
GCTGCGCTTACACATCTCTAACATCCCTGAGAACTTTTGCGAATCCTGTA30.186219739292365No Hit
GCTGCGCTTACACTTCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGT30.186219739292365No Hit
GCTGCGCTTACACATCCCTAGAACTTTTGCGAATCCTGTAGAACCATGTC30.186219739292365No Hit
GCTGCGCTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACAATGT30.186219739292365No Hit
GCTGGCTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC30.186219739292365No Hit
GCTGCGCTTACACATCTCTTCCCTCATCGACATCCCTGAGAACTTTTGCG30.186219739292365No Hit
GCTGCGCTTACACATCTCTGAGAACTTTTGTGAATCCTGTAGAACCATGT30.186219739292365No Hit
GCTGCGCTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCAGTC20.12414649286157665No Hit
GCTGCGCTTACACATCCCTGAAACTTTTGCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
TCCTATCAGTGGCGCAAGGCCTAAACAGGAGTTGAATCCTGTAGAACCAT20.12414649286157665No Hit
GCTGCGCTTACACATCTCTGAGAACTTTTCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
GCTGCGCTTACACATCCCTGAGAACTTTTGAGAATCCTGTAGAACAATGT20.12414649286157665No Hit
GCTGCGCCTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGT20.12414649286157665No Hit
GCTGCGCTACACATCTCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
GCTGCGCTTACGCATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGT20.12414649286157665No Hit
TCCTATCAGTGGCCGCAAGGCCTAACAGGAGTTGAATCCTGTAGAACCAT20.12414649286157665No Hit
GCTGCGCTTACACATCTCTGAGACTTTTGCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
GCTGCGCTTACACATCCCTGAGAACTTTTGCGAATCCTGAAGAACCATGT20.12414649286157665No Hit
GCTGCGCTTACACATCTCTGAGAACTTTTGCCGAATCCTGTAGAACCATG20.12414649286157665No Hit
CTGCGCTTACACATCCCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
GCTGCGCTTACACATCTCTGAGAACTTTTGGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
TCCTATCAGTGGCCGCAAGGCCTAAACAGAGTTGAATCCTGTAGAACCAT20.12414649286157665No Hit
TCCTATAGTGGCCGCAAGGCCTAAACAGGAGTTGAATCCTGTAGAACCAT20.12414649286157665No Hit
GCTGCGCTTAACATCTCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
GCTGCGCTTACACATTCCTGAGAACTTTTGCGAATCCTGTAGAACCATGT20.12414649286157665No Hit
GCTGCGCTTACACATCTCTTAGAACTTTTGCGAATCCTGTAGAACCATGT20.12414649286157665No Hit
GCTGCGCTTACACATCCCTGAGAACTTTTGGAATCCTGTAGAACCATGTC20.12414649286157665No Hit
CTGCGCTTACACATCTCTGAGAACTTTTGCGAATCCTGTAGAACCATGTC20.12414649286157665No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)